Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CASTOR2 (cytosolic arginine sensor for mTORC1 subunit 2)

Identity

Alias_namesGATSL1
GATSL2
GATS protein-like 1
GATS protein like 2
Other alias
HGNC (Hugo) CASTOR2
LocusID (NCBI) 729438
Atlas_Id 79333
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 74964818 and ends at 75031532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASTOR2   37073
Cards
Entrez_Gene (NCBI)CASTOR2  729438  cytosolic arginine sensor for mTORC1 subunit 2
AliasesGATSL1; GATSL2
GeneCards (Weizmann)CASTOR2
Ensembl hg19 (Hinxton)ENSG00000274070 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274070 [Gene_View]  ENSG00000274070 [Sequence]  chr7:74964818-75031532 [Contig_View]  CASTOR2 [Vega]
ICGC DataPortalENSG00000274070
TCGA cBioPortalCASTOR2
AceView (NCBI)CASTOR2
Genatlas (Paris)CASTOR2
WikiGenes729438
SOURCE (Princeton)CASTOR2
Genetics Home Reference (NIH)CASTOR2
Genomic and cartography
GoldenPath hg38 (UCSC)CASTOR2  -     chr7:74964818-75031532 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASTOR2  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblCASTOR2 - 7q11.23 [CytoView hg19]  CASTOR2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBICASTOR2 [Mapview hg19]  CASTOR2 [Mapview hg38]
OMIM617033   
Gene and transcription
Genbank (Entrez)AK123110 AL832384 BC018936 BC048422 BC147030
RefSeq transcript (Entrez)NM_001145064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASTOR2
Cluster EST : UnigeneHs.728007 [ NCBI ]
CGAP (NCI)Hs.728007
Alternative Splicing GalleryENSG00000274070
Gene ExpressionCASTOR2 [ NCBI-GEO ]   CASTOR2 [ EBI - ARRAY_EXPRESS ]   CASTOR2 [ SEEK ]   CASTOR2 [ MEM ]
Gene Expression Viewer (FireBrowse)CASTOR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729438
GTEX Portal (Tissue expression)CASTOR2
Human Protein AtlasENSG00000274070-CASTOR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASTOR2
DMDM Disease mutations729438
Blocks (Seattle)CASTOR2
Human Protein Atlas [tissue]ENSG00000274070-CASTOR2 [tissue]
IPIIPI00921468   
Protein Interaction databases
FunCoupENSG00000274070
BioGRIDCASTOR2
STRING (EMBL)CASTOR2
ZODIACCASTOR2
Ontologies - Pathways
Huge Navigator CASTOR2 [HugePedia]
snp3D : Map Gene to Disease729438
BioCentury BCIQCASTOR2
ClinGenCASTOR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729438
Chemical/Pharm GKB GenePA164720237
Clinical trialCASTOR2
Miscellaneous
canSAR (ICR)CASTOR2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASTOR2
EVEXCASTOR2
GoPubMedCASTOR2
iHOPCASTOR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:39:18 CEST 2018

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