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CATIP (ciliogenesis associated TTC17 interacting protein)

Identity

Alias_namesC2orf62
chromosome 2 open reading frame 62
Alias_symbol (synonym)MGC50811
Other alias
HGNC (Hugo) CATIP
LocusID (NCBI) 375307
Atlas_Id 61430
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 218356856 and ends at 218368094 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATIP   25062
Cards
Entrez_Gene (NCBI)CATIP  375307  ciliogenesis associated TTC17 interacting protein
AliasesC2orf62
GeneCards (Weizmann)CATIP
Ensembl hg19 (Hinxton)ENSG00000158428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158428 [Gene_View]  chr2:218356856-218368094 [Contig_View]  CATIP [Vega]
ICGC DataPortalENSG00000158428
TCGA cBioPortalCATIP
AceView (NCBI)CATIP
Genatlas (Paris)CATIP
WikiGenes375307
SOURCE (Princeton)CATIP
Genetics Home Reference (NIH)CATIP
Genomic and cartography
GoldenPath hg38 (UCSC)CATIP  -     chr2:218356856-218368094 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATIP  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblCATIP - 2q35 [CytoView hg19]  CATIP - 2q35 [CytoView hg38]
Mapping of homologs : NCBICATIP [Mapview hg19]  CATIP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098178 BC052750 HQ448628
RefSeq transcript (Entrez)NM_001320865 NM_198559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATIP
Cluster EST : UnigeneHs.645453 [ NCBI ]
CGAP (NCI)Hs.645453
Alternative Splicing GalleryENSG00000158428
Gene ExpressionCATIP [ NCBI-GEO ]   CATIP [ EBI - ARRAY_EXPRESS ]   CATIP [ SEEK ]   CATIP [ MEM ]
Gene Expression Viewer (FireBrowse)CATIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375307
GTEX Portal (Tissue expression)CATIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7H3
Splice isoforms : SwissVarQ7Z7H3
PhosPhoSitePlusQ7Z7H3
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CATIP
DMDM Disease mutations375307
Blocks (Seattle)CATIP
SuperfamilyQ7Z7H3
Human Protein AtlasENSG00000158428
Peptide AtlasQ7Z7H3
HPRD11846
IPIIPI00374196   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7H3
IntAct (EBI)Q7Z7H3
FunCoupENSG00000158428
BioGRIDCATIP
STRING (EMBL)CATIP
ZODIACCATIP
Ontologies - Pathways
QuickGOQ7Z7H3
Ontology : AmiGOprotein binding  nucleus  cytoplasm  plasma membrane  actin cytoskeleton  actin filament polymerization  cilium organization  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  plasma membrane  actin cytoskeleton  actin filament polymerization  cilium organization  
NDEx NetworkCATIP
Atlas of Cancer Signalling NetworkCATIP
Wikipedia pathwaysCATIP
Orthology - Evolution
OrthoDB375307
GeneTree (enSembl)ENSG00000158428
Phylogenetic Trees/Animal Genes : TreeFamCATIP
HOVERGENQ7Z7H3
HOGENOMQ7Z7H3
Homologs : HomoloGeneCATIP
Homology/Alignments : Family Browser (UCSC)CATIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATIP
dbVarCATIP
ClinVarCATIP
1000_GenomesCATIP 
Exome Variant ServerCATIP
ExAC (Exome Aggregation Consortium)CATIP (select the gene name)
Genetic variants : HAPMAP375307
Genomic Variants (DGV)CATIP [DGVbeta]
DECIPHERCATIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATIP 
Mutations
ICGC Data PortalCATIP 
TCGA Data PortalCATIP 
Broad Tumor PortalCATIP
OASIS PortalCATIP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCATIP
BioMutasearch CATIP
DgiDB (Drug Gene Interaction Database)CATIP
DoCM (Curated mutations)CATIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATIP (select a term)
intoGenCATIP
Cancer3DCATIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCATIP
Genetic Testing Registry CATIP
NextProtQ7Z7H3 [Medical]
TSGene375307
GENETestsCATIP
Target ValidationCATIP
Huge Navigator CATIP [HugePedia]
snp3D : Map Gene to Disease375307
BioCentury BCIQCATIP
ClinGenCATIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375307
Chemical/Pharm GKB GenePA162379334
Clinical trialCATIP
Miscellaneous
canSAR (ICR)CATIP (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATIP
EVEXCATIP
GoPubMedCATIP
iHOPCATIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:03:55 CEST 2017

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