Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CATR1 (CATR tumorigenicity conversion 1)

Identity

Other alias-
HGNC (Hugo) CATR1
LocusID (NCBI) 856
Atlas_Id 931
Location 7q32  [Link to chromosome band 7q32]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CATR1   1525
Cards
Entrez_Gene (NCBI)CATR1  856  CATR tumorigenicity conversion 1
Aliases
GeneCards (Weizmann)CATR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  CATR1 [Vega]
TCGA cBioPortalCATR1
AceView (NCBI)CATR1
Genatlas (Paris)CATR1
WikiGenes856
SOURCE (Princeton)CATR1
Genetics Home Reference (NIH)CATR1
Genomic and cartography
GoldenPath hg38 (UCSC)CATR1  -  
GoldenPath hg19 (UCSC)CATR1  -  
EnsemblCATR1 - [CytoView hg19]  CATR1 - [CytoView hg38]
Mapping of homologs : NCBICATR1 [Mapview hg19]  CATR1 [Mapview hg38]
OMIM600676   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATR1
Gene ExpressionCATR1 [ NCBI-GEO ]   CATR1 [ EBI - ARRAY_EXPRESS ]   CATR1 [ SEEK ]   CATR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CATR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)856
GTEX Portal (Tissue expression)CATR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13166   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13166  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13166
Splice isoforms : SwissVarQ13166
PhosPhoSitePlusQ13166
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CATR1
DMDM Disease mutations856
Blocks (Seattle)CATR1
SuperfamilyQ13166
Peptide AtlasQ13166
IPIIPI00011941   
Protein Interaction databases
DIP (DOE-UCLA)Q13166
IntAct (EBI)Q13166
BioGRIDCATR1
STRING (EMBL)CATR1
ZODIACCATR1
Ontologies - Pathways
QuickGOQ13166
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkCATR1
Atlas of Cancer Signalling NetworkCATR1
Wikipedia pathwaysCATR1
Orthology - Evolution
OrthoDB856
Phylogenetic Trees/Animal Genes : TreeFamCATR1
HOVERGENQ13166
HOGENOMQ13166
Homologs : HomoloGeneCATR1
Homology/Alignments : Family Browser (UCSC)CATR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATR1
dbVarCATR1
ClinVarCATR1
1000_GenomesCATR1 
Exome Variant ServerCATR1
ExAC (Exome Aggregation Consortium)CATR1 (select the gene name)
Genetic variants : HAPMAP856
Genomic Variants (DGV)CATR1 [DGVbeta]
DECIPHERCATR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATR1 
Mutations
ICGC Data PortalCATR1 
TCGA Data PortalCATR1 
Broad Tumor PortalCATR1
OASIS PortalCATR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCATR1
BioMutasearch CATR1
DgiDB (Drug Gene Interaction Database)CATR1
DoCM (Curated mutations)CATR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATR1 (select a term)
intoGenCATR1
Cancer3DCATR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600676   
Orphanet
MedgenCATR1
Genetic Testing Registry CATR1
NextProtQ13166 [Medical]
TSGene856
GENETestsCATR1
Target ValidationCATR1
Huge Navigator CATR1 [HugePedia]
snp3D : Map Gene to Disease856
BioCentury BCIQCATR1
ClinGenCATR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD856
Chemical/Pharm GKB GenePA26106
Clinical trialCATR1
Miscellaneous
canSAR (ICR)CATR1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATR1
EVEXCATR1
GoPubMedCATR1
iHOPCATR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:37 CEST 2017

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