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CATSPER2 (cation channel sperm associated 2)

Identity

Alias_namescation channel, sperm associated 2
Other alias-
HGNC (Hugo) CATSPER2
LocusID (NCBI) 117155
Atlas_Id 61434
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43630562 and ends at 43648884 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPER2   18810
Cards
Entrez_Gene (NCBI)CATSPER2  117155  cation channel sperm associated 2
Aliases
GeneCards (Weizmann)CATSPER2
Ensembl hg19 (Hinxton)ENSG00000166762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166762 [Gene_View]  chr15:43630562-43648884 [Contig_View]  CATSPER2 [Vega]
ICGC DataPortalENSG00000166762
TCGA cBioPortalCATSPER2
AceView (NCBI)CATSPER2
Genatlas (Paris)CATSPER2
WikiGenes117155
SOURCE (Princeton)CATSPER2
Genetics Home Reference (NIH)CATSPER2
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPER2  -     chr15:43630562-43648884 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPER2  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblCATSPER2 - 15q15.3 [CytoView hg19]  CATSPER2 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBICATSPER2 [Mapview hg19]  CATSPER2 [Mapview hg38]
OMIM607249   611102   612997   
Gene and transcription
Genbank (Entrez)AF411817 AF411818 AF411819 AK093318 AK122607
RefSeq transcript (Entrez)NM_001282309 NM_001282310 NM_054020 NM_172095 NM_172097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPER2
Cluster EST : UnigeneHs.662284 [ NCBI ]
CGAP (NCI)Hs.662284
Alternative Splicing GalleryENSG00000166762
Gene ExpressionCATSPER2 [ NCBI-GEO ]   CATSPER2 [ EBI - ARRAY_EXPRESS ]   CATSPER2 [ SEEK ]   CATSPER2 [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117155
GTEX Portal (Tissue expression)CATSPER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P56
Splice isoforms : SwissVarQ96P56
PhosPhoSitePlusQ96P56
Domains : Interpro (EBI)CatSper2    Channel_four-helix_dom    Ion_trans_dom   
Domain families : Pfam (Sanger)Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00520   
Conserved Domain (NCBI)CATSPER2
DMDM Disease mutations117155
Blocks (Seattle)CATSPER2
SuperfamilyQ96P56
Human Protein AtlasENSG00000166762
Peptide AtlasQ96P56
HPRD16236
IPIIPI00065918   IPI00788611   IPI00797407   IPI00797980   IPI00893759   IPI00894265   IPI00892632   IPI00892956   IPI00916199   
Protein Interaction databases
DIP (DOE-UCLA)Q96P56
IntAct (EBI)Q96P56
FunCoupENSG00000166762
BioGRIDCATSPER2
STRING (EMBL)CATSPER2
ZODIACCATSPER2
Ontologies - Pathways
QuickGOQ96P56
Ontology : AmiGOcalcium activated cation channel activity  voltage-gated sodium channel activity  calcium channel activity  protein binding  plasma membrane  plasma membrane  multicellular organism development  spermatogenesis  neuronal action potential  cell differentiation  flagellated sperm motility  motile cilium  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  sodium ion transmembrane transport  CatSper complex  regulation of postsynaptic membrane potential  calcium ion transmembrane transport  membrane depolarization during action potential  
Ontology : EGO-EBIcalcium activated cation channel activity  voltage-gated sodium channel activity  calcium channel activity  protein binding  plasma membrane  plasma membrane  multicellular organism development  spermatogenesis  neuronal action potential  cell differentiation  flagellated sperm motility  motile cilium  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  sodium ion transmembrane transport  CatSper complex  regulation of postsynaptic membrane potential  calcium ion transmembrane transport  membrane depolarization during action potential  
NDEx NetworkCATSPER2
Atlas of Cancer Signalling NetworkCATSPER2
Wikipedia pathwaysCATSPER2
Orthology - Evolution
OrthoDB117155
GeneTree (enSembl)ENSG00000166762
Phylogenetic Trees/Animal Genes : TreeFamCATSPER2
HOVERGENQ96P56
HOGENOMQ96P56
Homologs : HomoloGeneCATSPER2
Homology/Alignments : Family Browser (UCSC)CATSPER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPER2
dbVarCATSPER2
ClinVarCATSPER2
1000_GenomesCATSPER2 
Exome Variant ServerCATSPER2
ExAC (Exome Aggregation Consortium)CATSPER2 (select the gene name)
Genetic variants : HAPMAP117155
Genomic Variants (DGV)CATSPER2 [DGVbeta]
DECIPHERCATSPER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPER2 
Mutations
ICGC Data PortalCATSPER2 
TCGA Data PortalCATSPER2 
Broad Tumor PortalCATSPER2
OASIS PortalCATSPER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPER2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPER2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPER2
DgiDB (Drug Gene Interaction Database)CATSPER2
DoCM (Curated mutations)CATSPER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPER2 (select a term)
intoGenCATSPER2
Cancer3DCATSPER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607249    611102    612997   
Orphanet12545   
MedgenCATSPER2
Genetic Testing Registry CATSPER2
NextProtQ96P56 [Medical]
TSGene117155
GENETestsCATSPER2
Target ValidationCATSPER2
Huge Navigator CATSPER2 [HugePedia]
snp3D : Map Gene to Disease117155
BioCentury BCIQCATSPER2
ClinGenCATSPER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117155
Chemical/Pharm GKB GenePA38691
Clinical trialCATSPER2
Miscellaneous
canSAR (ICR)CATSPER2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPER2
EVEXCATSPER2
GoPubMedCATSPER2
iHOPCATSPER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:11 CEST 2017

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