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CATSPER2 (cation channel sperm associated 2)

Identity

Alias (NCBI)-
HGNC (Hugo) CATSPER2
HGNC Previous namecation channel, sperm associated 2
LocusID (NCBI) 117155
Atlas_Id 61434
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43628503 and ends at 43648844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CATSPER2   18810
Cards
Entrez_Gene (NCBI)CATSPER2    cation channel sperm associated 2
Aliases
GeneCards (Weizmann)CATSPER2
Ensembl hg19 (Hinxton)ENSG00000166762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166762 [Gene_View]  ENSG00000166762 [Sequence]  chr15:43628503-43648844 [Contig_View]  CATSPER2 [Vega]
ICGC DataPortalENSG00000166762
TCGA cBioPortalCATSPER2
AceView (NCBI)CATSPER2
Genatlas (Paris)CATSPER2
SOURCE (Princeton)CATSPER2
Genetics Home Reference (NIH)CATSPER2
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPER2  -     chr15:43628503-43648844 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPER2  -     15q15.3   [Description]    (hg19-Feb_2009)
GoldenPathCATSPER2 - 15q15.3 [CytoView hg19]  CATSPER2 - 15q15.3 [CytoView hg38]
ImmunoBaseENSG00000166762
Genome Data Viewer NCBICATSPER2 [Mapview hg19]  
OMIM607249   611102   612997   
Gene and transcription
Genbank (Entrez)AF411817 AF411818 AF411819 AK093318 AK122607
RefSeq transcript (Entrez)NM_001282309 NM_001282310 NM_054020 NM_172095 NM_172097
Consensus coding sequences : CCDS (NCBI)CATSPER2
Gene ExpressionCATSPER2 [ NCBI-GEO ]   CATSPER2 [ EBI - ARRAY_EXPRESS ]   CATSPER2 [ SEEK ]   CATSPER2 [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPER2 [ Firebrowse - Broad ]
GenevisibleExpression of CATSPER2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117155
GTEX Portal (Tissue expression)CATSPER2
Human Protein AtlasENSG00000166762-CATSPER2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P56
PhosPhoSitePlusQ96P56
Domains : Interpro (EBI)CatSper2    Ion_trans_dom    Volt_channel_dom_sf   
Domain families : Pfam (Sanger)Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00520   
Conserved Domain (NCBI)CATSPER2
SuperfamilyQ96P56
AlphaFold pdb e-kbQ96P56   
Human Protein Atlas [tissue]ENSG00000166762-CATSPER2 [tissue]
HPRD16236
Protein Interaction databases
DIP (DOE-UCLA)Q96P56
IntAct (EBI)Q96P56
BioGRIDCATSPER2
STRING (EMBL)CATSPER2
ZODIACCATSPER2
Ontologies - Pathways
QuickGOQ96P56
Ontology : AmiGOcalcium activated cation channel activity  voltage-gated ion channel activity  calcium channel activity  protein binding  plasma membrane  multicellular organism development  fertilization  flagellated sperm motility  motile cilium  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  CatSper complex  sperm capacitation  calcium ion transmembrane transport  
Ontology : EGO-EBIcalcium activated cation channel activity  voltage-gated ion channel activity  calcium channel activity  protein binding  plasma membrane  multicellular organism development  fertilization  flagellated sperm motility  motile cilium  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  CatSper complex  sperm capacitation  calcium ion transmembrane transport  
NDEx NetworkCATSPER2
Atlas of Cancer Signalling NetworkCATSPER2
Wikipedia pathwaysCATSPER2
Orthology - Evolution
OrthoDB117155
GeneTree (enSembl)ENSG00000166762
Phylogenetic Trees/Animal Genes : TreeFamCATSPER2
Homologs : HomoloGeneCATSPER2
Homology/Alignments : Family Browser (UCSC)CATSPER2
Gene fusions - Rearrangements
Fusion : QuiverCATSPER2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPER2
dbVarCATSPER2
ClinVarCATSPER2
MonarchCATSPER2
1000_GenomesCATSPER2 
Exome Variant ServerCATSPER2
GNOMAD BrowserENSG00000166762
Varsome BrowserCATSPER2
ACMGCATSPER2 variants
VarityQ96P56
Genomic Variants (DGV)CATSPER2 [DGVbeta]
DECIPHERCATSPER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPER2 
Mutations
ICGC Data PortalCATSPER2 
TCGA Data PortalCATSPER2 
Broad Tumor PortalCATSPER2
OASIS PortalCATSPER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPER2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCATSPER2
Mutations and Diseases : HGMDCATSPER2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCATSPER2
DgiDB (Drug Gene Interaction Database)CATSPER2
DoCM (Curated mutations)CATSPER2
CIViC (Clinical Interpretations of Variants in Cancer)CATSPER2
Cancer3DCATSPER2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607249    611102    612997   
Orphanet12545   
DisGeNETCATSPER2
MedgenCATSPER2
Genetic Testing Registry CATSPER2
NextProtQ96P56 [Medical]
GENETestsCATSPER2
Target ValidationCATSPER2
Huge Navigator CATSPER2 [HugePedia]
ClinGenCATSPER2
Clinical trials, drugs, therapy
MyCancerGenomeCATSPER2
Protein Interactions : CTDCATSPER2
Pharm GKB GenePA38691
PharosQ96P56
Clinical trialCATSPER2
Miscellaneous
canSAR (ICR)CATSPER2
HarmonizomeCATSPER2
DataMed IndexCATSPER2
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCATSPER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:44:54 CEST 2021

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