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CATSPER3 (cation channel sperm associated 3)

Identity

Alias_namescation channel, sperm associated 3
Alias_symbol (synonym)CACRC
Other alias
HGNC (Hugo) CATSPER3
LocusID (NCBI) 347732
Atlas_Id 61436
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134967906 and ends at 135011707 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPER3   20819
Cards
Entrez_Gene (NCBI)CATSPER3  347732  cation channel sperm associated 3
AliasesCACRC
GeneCards (Weizmann)CATSPER3
Ensembl hg19 (Hinxton)ENSG00000152705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152705 [Gene_View]  chr5:134967906-135011707 [Contig_View]  CATSPER3 [Vega]
ICGC DataPortalENSG00000152705
TCGA cBioPortalCATSPER3
AceView (NCBI)CATSPER3
Genatlas (Paris)CATSPER3
WikiGenes347732
SOURCE (Princeton)CATSPER3
Genetics Home Reference (NIH)CATSPER3
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPER3  -     chr5:134967906-135011707 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPER3  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblCATSPER3 - 5q31.1 [CytoView hg19]  CATSPER3 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBICATSPER3 [Mapview hg19]  CATSPER3 [Mapview hg38]
OMIM609120   
Gene and transcription
Genbank (Entrez)AF432876 AK292427 AW008956 AY156951 BC101692
RefSeq transcript (Entrez)NM_178019
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPER3
Cluster EST : UnigeneHs.631804 [ NCBI ]
CGAP (NCI)Hs.631804
Alternative Splicing GalleryENSG00000152705
Gene ExpressionCATSPER3 [ NCBI-GEO ]   CATSPER3 [ EBI - ARRAY_EXPRESS ]   CATSPER3 [ SEEK ]   CATSPER3 [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPER3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347732
GTEX Portal (Tissue expression)CATSPER3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XQ3
Splice isoforms : SwissVarQ86XQ3
PhosPhoSitePlusQ86XQ3
Domains : Interpro (EBI)Ion_trans_dom   
Domain families : Pfam (Sanger)Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00520   
Conserved Domain (NCBI)CATSPER3
DMDM Disease mutations347732
Blocks (Seattle)CATSPER3
SuperfamilyQ86XQ3
Human Protein AtlasENSG00000152705
Peptide AtlasQ86XQ3
HPRD16447
IPIIPI00256795   
Protein Interaction databases
DIP (DOE-UCLA)Q86XQ3
IntAct (EBI)Q86XQ3
FunCoupENSG00000152705
BioGRIDCATSPER3
STRING (EMBL)CATSPER3
ZODIACCATSPER3
Ontologies - Pathways
QuickGOQ86XQ3
Ontology : AmiGOacrosomal vesicle  voltage-gated calcium channel activity  cation channel activity  endoplasmic reticulum  plasma membrane  plasma membrane  sodium ion transport  calcium ion transport  multicellular organism development  flagellated sperm motility  motile cilium  response to progesterone  ion transmembrane transport  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  sperm capacitation  calcium ion transmembrane transport  membrane depolarization during action potential  
Ontology : EGO-EBIacrosomal vesicle  voltage-gated calcium channel activity  cation channel activity  endoplasmic reticulum  plasma membrane  plasma membrane  sodium ion transport  calcium ion transport  multicellular organism development  flagellated sperm motility  motile cilium  response to progesterone  ion transmembrane transport  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  sperm capacitation  calcium ion transmembrane transport  membrane depolarization during action potential  
NDEx NetworkCATSPER3
Atlas of Cancer Signalling NetworkCATSPER3
Wikipedia pathwaysCATSPER3
Orthology - Evolution
OrthoDB347732
GeneTree (enSembl)ENSG00000152705
Phylogenetic Trees/Animal Genes : TreeFamCATSPER3
HOVERGENQ86XQ3
HOGENOMQ86XQ3
Homologs : HomoloGeneCATSPER3
Homology/Alignments : Family Browser (UCSC)CATSPER3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPER3
dbVarCATSPER3
ClinVarCATSPER3
1000_GenomesCATSPER3 
Exome Variant ServerCATSPER3
ExAC (Exome Aggregation Consortium)CATSPER3 (select the gene name)
Genetic variants : HAPMAP347732
Genomic Variants (DGV)CATSPER3 [DGVbeta]
DECIPHERCATSPER3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPER3 
Mutations
ICGC Data PortalCATSPER3 
TCGA Data PortalCATSPER3 
Broad Tumor PortalCATSPER3
OASIS PortalCATSPER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPER3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPER3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPER3
DgiDB (Drug Gene Interaction Database)CATSPER3
DoCM (Curated mutations)CATSPER3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPER3 (select a term)
intoGenCATSPER3
Cancer3DCATSPER3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609120   
Orphanet
MedgenCATSPER3
Genetic Testing Registry CATSPER3
NextProtQ86XQ3 [Medical]
TSGene347732
GENETestsCATSPER3
Target ValidationCATSPER3
Huge Navigator CATSPER3 [HugePedia]
snp3D : Map Gene to Disease347732
BioCentury BCIQCATSPER3
ClinGenCATSPER3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347732
Chemical/Pharm GKB GenePA134911185
Clinical trialCATSPER3
Miscellaneous
canSAR (ICR)CATSPER3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPER3
EVEXCATSPER3
GoPubMedCATSPER3
iHOPCATSPER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:12 CEST 2017

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