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CATSPER4 (cation channel sperm associated 4)

Identity

Alias_namescation channel, sperm associated 4
Other alias-
HGNC (Hugo) CATSPER4
LocusID (NCBI) 378807
Atlas_Id 61437
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26190628 and ends at 26202542 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPER4   23220
Cards
Entrez_Gene (NCBI)CATSPER4  378807  cation channel sperm associated 4
Aliases
GeneCards (Weizmann)CATSPER4
Ensembl hg19 (Hinxton)ENSG00000188782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188782 [Gene_View]  chr1:26190628-26202542 [Contig_View]  CATSPER4 [Vega]
ICGC DataPortalENSG00000188782
TCGA cBioPortalCATSPER4
AceView (NCBI)CATSPER4
Genatlas (Paris)CATSPER4
WikiGenes378807
SOURCE (Princeton)CATSPER4
Genetics Home Reference (NIH)CATSPER4
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPER4  -     chr1:26190628-26202542 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPER4  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblCATSPER4 - 1p36.11 [CytoView hg19]  CATSPER4 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBICATSPER4 [Mapview hg19]  CATSPER4 [Mapview hg38]
OMIM609121   
Gene and transcription
Genbank (Entrez)BC128138 BC128139 BC144663 BN000273
RefSeq transcript (Entrez)NM_198137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPER4
Cluster EST : UnigeneHs.123532 [ NCBI ]
CGAP (NCI)Hs.123532
Alternative Splicing GalleryENSG00000188782
Gene ExpressionCATSPER4 [ NCBI-GEO ]   CATSPER4 [ EBI - ARRAY_EXPRESS ]   CATSPER4 [ SEEK ]   CATSPER4 [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPER4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378807
GTEX Portal (Tissue expression)CATSPER4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTX7
Splice isoforms : SwissVarQ7RTX7
PhosPhoSitePlusQ7RTX7
Domains : Interpro (EBI)CatSper4    Channel_four-helix_dom    Ion_trans_dom   
Domain families : Pfam (Sanger)Ion_trans (PF00520)   
Domain families : Pfam (NCBI)pfam00520   
Conserved Domain (NCBI)CATSPER4
DMDM Disease mutations378807
Blocks (Seattle)CATSPER4
SuperfamilyQ7RTX7
Human Protein AtlasENSG00000188782
Peptide AtlasQ7RTX7
HPRD18607
IPIIPI00398709   IPI00854776   IPI00973095   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTX7
IntAct (EBI)Q7RTX7
FunCoupENSG00000188782
BioGRIDCATSPER4
STRING (EMBL)CATSPER4
ZODIACCATSPER4
Ontologies - Pathways
QuickGOQ7RTX7
Ontology : AmiGOacrosomal vesicle  calcium activated cation channel activity  voltage-gated calcium channel activity  plasma membrane  plasma membrane  sodium ion transport  multicellular organism development  flagellated sperm motility  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  sperm capacitation  release of sequestered calcium ion into cytosol  NAADP-sensitive calcium-release channel activity  membrane depolarization during action potential  sperm principal piece  
Ontology : EGO-EBIacrosomal vesicle  calcium activated cation channel activity  voltage-gated calcium channel activity  plasma membrane  plasma membrane  sodium ion transport  multicellular organism development  flagellated sperm motility  response to progesterone  regulation of ion transmembrane transport  sperm-egg recognition  CatSper complex  sperm capacitation  release of sequestered calcium ion into cytosol  NAADP-sensitive calcium-release channel activity  membrane depolarization during action potential  sperm principal piece  
NDEx NetworkCATSPER4
Atlas of Cancer Signalling NetworkCATSPER4
Wikipedia pathwaysCATSPER4
Orthology - Evolution
OrthoDB378807
GeneTree (enSembl)ENSG00000188782
Phylogenetic Trees/Animal Genes : TreeFamCATSPER4
HOVERGENQ7RTX7
HOGENOMQ7RTX7
Homologs : HomoloGeneCATSPER4
Homology/Alignments : Family Browser (UCSC)CATSPER4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPER4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPER4
dbVarCATSPER4
ClinVarCATSPER4
1000_GenomesCATSPER4 
Exome Variant ServerCATSPER4
ExAC (Exome Aggregation Consortium)CATSPER4 (select the gene name)
Genetic variants : HAPMAP378807
Genomic Variants (DGV)CATSPER4 [DGVbeta]
DECIPHERCATSPER4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPER4 
Mutations
ICGC Data PortalCATSPER4 
TCGA Data PortalCATSPER4 
Broad Tumor PortalCATSPER4
OASIS PortalCATSPER4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPER4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPER4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPER4
DgiDB (Drug Gene Interaction Database)CATSPER4
DoCM (Curated mutations)CATSPER4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPER4 (select a term)
intoGenCATSPER4
Cancer3DCATSPER4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609121   
Orphanet
MedgenCATSPER4
Genetic Testing Registry CATSPER4
NextProtQ7RTX7 [Medical]
TSGene378807
GENETestsCATSPER4
Target ValidationCATSPER4
Huge Navigator CATSPER4 [HugePedia]
snp3D : Map Gene to Disease378807
BioCentury BCIQCATSPER4
ClinGenCATSPER4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378807
Chemical/Pharm GKB GenePA134941696
Clinical trialCATSPER4
Miscellaneous
canSAR (ICR)CATSPER4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPER4
EVEXCATSPER4
GoPubMedCATSPER4
iHOPCATSPER4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:56 CEST 2017

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