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CATSPERB (cation channel sperm associated auxiliary subunit beta)

Identity

Alias_namesC14orf161
chromosome 14 open reading frame 161
cation channel, sperm-associated, beta
catsper channel auxiliary subunit beta
Alias_symbol (synonym)FLJ14298
Other aliasCatSper(beta)
HGNC (Hugo) CATSPERB
LocusID (NCBI) 79820
Atlas_Id 61438
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 91580774 and ends at 91732086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CATSPERB (14q32.12) / ATXN3 (14q32.12)CATSPERB (14q32.12) / FBLN5 (14q32.12)CATSPERB (14q32.12) / KLC4 (6p21.1)
CATSPERB (14q32.12) / TC2N (14q32.12)CATSPERB (14q32.12) / TRIP11 (14q32.12)SYNE2 (14q23.2) / CATSPERB (14q32.12)
CATSPERB TC2NCATSPERB TRIP11CATSPERB ATXN3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPERB   20500
Cards
Entrez_Gene (NCBI)CATSPERB  79820  cation channel sperm associated auxiliary subunit beta
AliasesC14orf161; CatSper(beta)
GeneCards (Weizmann)CATSPERB
Ensembl hg19 (Hinxton)ENSG00000133962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133962 [Gene_View]  chr14:91580774-91732086 [Contig_View]  CATSPERB [Vega]
ICGC DataPortalENSG00000133962
TCGA cBioPortalCATSPERB
AceView (NCBI)CATSPERB
Genatlas (Paris)CATSPERB
WikiGenes79820
SOURCE (Princeton)CATSPERB
Genetics Home Reference (NIH)CATSPERB
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPERB  -     chr14:91580774-91732086 -  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPERB  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblCATSPERB - 14q32.12 [CytoView hg19]  CATSPERB - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBICATSPERB [Mapview hg19]  CATSPERB [Mapview hg38]
OMIM611169   
Gene and transcription
Genbank (Entrez)AK024360 AK126034 BC016315 BC126214 BC126216
RefSeq transcript (Entrez)NM_024764
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187598
Consensus coding sequences : CCDS (NCBI)CATSPERB
Cluster EST : UnigeneHs.131755 [ NCBI ]
CGAP (NCI)Hs.131755
Alternative Splicing GalleryENSG00000133962
Gene ExpressionCATSPERB [ NCBI-GEO ]   CATSPERB [ EBI - ARRAY_EXPRESS ]   CATSPERB [ SEEK ]   CATSPERB [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPERB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79820
GTEX Portal (Tissue expression)CATSPERB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7T0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7T0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7T0
Splice isoforms : SwissVarQ9H7T0
PhosPhoSitePlusQ9H7T0
Domains : Interpro (EBI)CATSPERB   
Domain families : Pfam (Sanger)CATSPERB (PF15149)   
Domain families : Pfam (NCBI)pfam15149   
Conserved Domain (NCBI)CATSPERB
DMDM Disease mutations79820
Blocks (Seattle)CATSPERB
SuperfamilyQ9H7T0
Human Protein AtlasENSG00000133962
Peptide AtlasQ9H7T0
HPRD16613
IPIIPI00015553   IPI00854780   IPI01024883   IPI01026405   IPI01026530   IPI01026207   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7T0
IntAct (EBI)Q9H7T0
FunCoupENSG00000133962
BioGRIDCATSPERB
STRING (EMBL)CATSPERB
ZODIACCATSPERB
Ontologies - Pathways
QuickGOQ9H7T0
Ontology : AmiGOplasma membrane  cilium  multicellular organism development  spermatogenesis  cell differentiation  response to progesterone  sperm-egg recognition  CatSper complex  
Ontology : EGO-EBIplasma membrane  cilium  multicellular organism development  spermatogenesis  cell differentiation  response to progesterone  sperm-egg recognition  CatSper complex  
NDEx NetworkCATSPERB
Atlas of Cancer Signalling NetworkCATSPERB
Wikipedia pathwaysCATSPERB
Orthology - Evolution
OrthoDB79820
GeneTree (enSembl)ENSG00000133962
Phylogenetic Trees/Animal Genes : TreeFamCATSPERB
HOVERGENQ9H7T0
HOGENOMQ9H7T0
Homologs : HomoloGeneCATSPERB
Homology/Alignments : Family Browser (UCSC)CATSPERB
Gene fusions - Rearrangements
Fusion: TCGACATSPERB TC2N
Fusion: TCGACATSPERB TRIP11
Fusion: TCGACATSPERB ATXN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPERB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPERB
dbVarCATSPERB
ClinVarCATSPERB
1000_GenomesCATSPERB 
Exome Variant ServerCATSPERB
ExAC (Exome Aggregation Consortium)CATSPERB (select the gene name)
Genetic variants : HAPMAP79820
Genomic Variants (DGV)CATSPERB [DGVbeta]
DECIPHERCATSPERB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPERB 
Mutations
ICGC Data PortalCATSPERB 
TCGA Data PortalCATSPERB 
Broad Tumor PortalCATSPERB
OASIS PortalCATSPERB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPERB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPERB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPERB
DgiDB (Drug Gene Interaction Database)CATSPERB
DoCM (Curated mutations)CATSPERB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPERB (select a term)
intoGenCATSPERB
Cancer3DCATSPERB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611169   
Orphanet
MedgenCATSPERB
Genetic Testing Registry CATSPERB
NextProtQ9H7T0 [Medical]
TSGene79820
GENETestsCATSPERB
Target ValidationCATSPERB
Huge Navigator CATSPERB [HugePedia]
snp3D : Map Gene to Disease79820
BioCentury BCIQCATSPERB
ClinGenCATSPERB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79820
Chemical/Pharm GKB GenePA162381112
Clinical trialCATSPERB
Miscellaneous
canSAR (ICR)CATSPERB (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPERB
EVEXCATSPERB
GoPubMedCATSPERB
iHOPCATSPERB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:56 CEST 2017

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