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CATSPERD (cation channel sperm associated auxiliary subunit delta)

Identity

Alias_namesTMEM146
transmembrane protein 146
catsper channel auxiliary subunit delta
Alias_symbol (synonym)MGC39581
Other alias
HGNC (Hugo) CATSPERD
LocusID (NCBI) 257062
Atlas_Id 61439
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5720677 and ends at 5778731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPERD   28598
Cards
Entrez_Gene (NCBI)CATSPERD  257062  cation channel sperm associated auxiliary subunit delta
AliasesTMEM146
GeneCards (Weizmann)CATSPERD
Ensembl hg19 (Hinxton)ENSG00000174898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174898 [Gene_View]  chr19:5720677-5778731 [Contig_View]  CATSPERD [Vega]
ICGC DataPortalENSG00000174898
TCGA cBioPortalCATSPERD
AceView (NCBI)CATSPERD
Genatlas (Paris)CATSPERD
WikiGenes257062
SOURCE (Princeton)CATSPERD
Genetics Home Reference (NIH)CATSPERD
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPERD  -     chr19:5720677-5778731 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPERD  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCATSPERD - 19p13.3 [CytoView hg19]  CATSPERD - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICATSPERD [Mapview hg19]  CATSPERD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128088 BC031233 BC043005
RefSeq transcript (Entrez)NM_152784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPERD
Cluster EST : UnigeneHs.631842 [ NCBI ]
CGAP (NCI)Hs.631842
Alternative Splicing GalleryENSG00000174898
Gene ExpressionCATSPERD [ NCBI-GEO ]   CATSPERD [ EBI - ARRAY_EXPRESS ]   CATSPERD [ SEEK ]   CATSPERD [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPERD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257062
GTEX Portal (Tissue expression)CATSPERD
Human Protein AtlasENSG00000174898-CATSPERD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XM0
Splice isoforms : SwissVarQ86XM0
PhosPhoSitePlusQ86XM0
Domains : Interpro (EBI)CATSPERD   
Domain families : Pfam (Sanger)CATSPERD (PF15020)   
Domain families : Pfam (NCBI)pfam15020   
Conserved Domain (NCBI)CATSPERD
DMDM Disease mutations257062
Blocks (Seattle)CATSPERD
SuperfamilyQ86XM0
Human Protein Atlas [tissue]ENSG00000174898-CATSPERD [tissue]
Peptide AtlasQ86XM0
HPRD17541
IPIIPI00329251   IPI00921312   IPI00640134   IPI00443965   IPI00853178   IPI00852598   
Protein Interaction databases
DIP (DOE-UCLA)Q86XM0
IntAct (EBI)Q86XM0
FunCoupENSG00000174898
BioGRIDCATSPERD
STRING (EMBL)CATSPERD
ZODIACCATSPERD
Ontologies - Pathways
QuickGOQ86XM0
Ontology : AmiGOprotein binding  plasma membrane  multicellular organism development  spermatogenesis  flagellated sperm motility  response to progesterone  sperm-egg recognition  CatSper complex  sperm capacitation  sperm principal piece  
Ontology : EGO-EBIprotein binding  plasma membrane  multicellular organism development  spermatogenesis  flagellated sperm motility  response to progesterone  sperm-egg recognition  CatSper complex  sperm capacitation  sperm principal piece  
NDEx NetworkCATSPERD
Atlas of Cancer Signalling NetworkCATSPERD
Wikipedia pathwaysCATSPERD
Orthology - Evolution
OrthoDB257062
GeneTree (enSembl)ENSG00000174898
Phylogenetic Trees/Animal Genes : TreeFamCATSPERD
HOVERGENQ86XM0
HOGENOMQ86XM0
Homologs : HomoloGeneCATSPERD
Homology/Alignments : Family Browser (UCSC)CATSPERD
Gene fusions - Rearrangements
Tumor Fusion PortalCATSPERD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPERD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPERD
dbVarCATSPERD
ClinVarCATSPERD
1000_GenomesCATSPERD 
Exome Variant ServerCATSPERD
ExAC (Exome Aggregation Consortium)ENSG00000174898
GNOMAD BrowserENSG00000174898
Genetic variants : HAPMAP257062
Genomic Variants (DGV)CATSPERD [DGVbeta]
DECIPHERCATSPERD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPERD 
Mutations
ICGC Data PortalCATSPERD 
TCGA Data PortalCATSPERD 
Broad Tumor PortalCATSPERD
OASIS PortalCATSPERD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPERD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPERD
BioMutasearch CATSPERD
DgiDB (Drug Gene Interaction Database)CATSPERD
DoCM (Curated mutations)CATSPERD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPERD (select a term)
intoGenCATSPERD
Cancer3DCATSPERD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCATSPERD
MedgenCATSPERD
Genetic Testing Registry CATSPERD
NextProtQ86XM0 [Medical]
TSGene257062
GENETestsCATSPERD
Target ValidationCATSPERD
Huge Navigator CATSPERD [HugePedia]
snp3D : Map Gene to Disease257062
BioCentury BCIQCATSPERD
ClinGenCATSPERD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257062
Chemical/Pharm GKB GenePA144596254
Clinical trialCATSPERD
Miscellaneous
canSAR (ICR)CATSPERD (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPERD
EVEXCATSPERD
GoPubMedCATSPERD
iHOPCATSPERD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:16 CET 2017

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