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CATSPERE (catsper channel auxiliary subunit epsilon)

Identity

Alias_namesC1orf101
chromosome 1 open reading frame 101
Alias_symbol (synonym)MGC33370
Other aliasC10orf101
HGNC (Hugo) CATSPERE
LocusID (NCBI) 257044
Atlas_Id 79692
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 244461371 and ends at 244640360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPERE   28491
Cards
Entrez_Gene (NCBI)CATSPERE  257044  catsper channel auxiliary subunit epsilon
AliasesC10orf101; C1orf101
GeneCards (Weizmann)CATSPERE
Ensembl hg19 (Hinxton)ENSG00000179397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179397 [Gene_View]  chr1:244461371-244640360 [Contig_View]  CATSPERE [Vega]
ICGC DataPortalENSG00000179397
TCGA cBioPortalCATSPERE
AceView (NCBI)CATSPERE
Genatlas (Paris)CATSPERE
WikiGenes257044
SOURCE (Princeton)CATSPERE
Genetics Home Reference (NIH)CATSPERE
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPERE  -     chr1:244461371-244640360 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPERE  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblCATSPERE - 1q44 [CytoView hg19]  CATSPERE - 1q44 [CytoView hg38]
Mapping of homologs : NCBICATSPERE [Mapview hg19]  CATSPERE [Mapview hg38]
OMIM617510   
Gene and transcription
Genbank (Entrez)AK027205 AK302609 AK303059 BC028392 BC032859
RefSeq transcript (Entrez)NM_001130957 NM_001242340 NM_173807
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPERE
Cluster EST : UnigeneHs.459534 [ NCBI ]
CGAP (NCI)Hs.459534
Alternative Splicing GalleryENSG00000179397
Gene ExpressionCATSPERE [ NCBI-GEO ]   CATSPERE [ EBI - ARRAY_EXPRESS ]   CATSPERE [ SEEK ]   CATSPERE [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPERE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257044
GTEX Portal (Tissue expression)CATSPERE
Human Protein AtlasENSG00000179397-CATSPERE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY80
Splice isoforms : SwissVarQ5SY80
PhosPhoSitePlusQ5SY80
Domains : Interpro (EBI)CATSPERD   
Domain families : Pfam (Sanger)CATSPERD (PF15020)   
Domain families : Pfam (NCBI)pfam15020   
Conserved Domain (NCBI)CATSPERE
DMDM Disease mutations257044
Blocks (Seattle)CATSPERE
SuperfamilyQ5SY80
Human Protein Atlas [tissue]ENSG00000179397-CATSPERE [tissue]
Peptide AtlasQ5SY80
IPIIPI00217937   IPI00645983   IPI01009770   IPI00514357   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY80
IntAct (EBI)Q5SY80
FunCoupENSG00000179397
BioGRIDCATSPERE
STRING (EMBL)CATSPERE
ZODIACCATSPERE
Ontologies - Pathways
QuickGOQ5SY80
Ontology : AmiGOCatSper complex  sperm principal piece  
Ontology : EGO-EBICatSper complex  sperm principal piece  
NDEx NetworkCATSPERE
Atlas of Cancer Signalling NetworkCATSPERE
Wikipedia pathwaysCATSPERE
Orthology - Evolution
OrthoDB257044
GeneTree (enSembl)ENSG00000179397
Phylogenetic Trees/Animal Genes : TreeFamCATSPERE
HOVERGENQ5SY80
HOGENOMQ5SY80
Homologs : HomoloGeneCATSPERE
Homology/Alignments : Family Browser (UCSC)CATSPERE
Gene fusions - Rearrangements
Tumor Fusion PortalCATSPERE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPERE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPERE
dbVarCATSPERE
ClinVarCATSPERE
1000_GenomesCATSPERE 
Exome Variant ServerCATSPERE
ExAC (Exome Aggregation Consortium)ENSG00000179397
GNOMAD BrowserENSG00000179397
Genetic variants : HAPMAP257044
Genomic Variants (DGV)CATSPERE [DGVbeta]
DECIPHERCATSPERE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPERE 
Mutations
ICGC Data PortalCATSPERE 
TCGA Data PortalCATSPERE 
Broad Tumor PortalCATSPERE
OASIS PortalCATSPERE [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCATSPERE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPERE
DgiDB (Drug Gene Interaction Database)CATSPERE
DoCM (Curated mutations)CATSPERE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPERE (select a term)
intoGenCATSPERE
Cancer3DCATSPERE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617510   
Orphanet
DisGeNETCATSPERE
MedgenCATSPERE
Genetic Testing Registry CATSPERE
NextProtQ5SY80 [Medical]
TSGene257044
GENETestsCATSPERE
Target ValidationCATSPERE
Huge Navigator CATSPERE [HugePedia]
snp3D : Map Gene to Disease257044
BioCentury BCIQCATSPERE
ClinGenCATSPERE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257044
Chemical/Pharm GKB GenePA142672485
Clinical trialCATSPERE
Miscellaneous
canSAR (ICR)CATSPERE (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPERE
EVEXCATSPERE
GoPubMedCATSPERE
iHOPCATSPERE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:35 CET 2017

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