Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CATSPERG (cation channel sperm associated auxiliary subunit gamma)

Identity

Alias_namesC19orf15
chromosome 19 open reading frame 15
cation channel, sperm-associated, gamma
catsper channel auxiliary subunit gamma
Alias_symbol (synonym)DKFZp434A1022
FLJ46353
Other alias
HGNC (Hugo) CATSPERG
LocusID (NCBI) 57828
Atlas_Id 61440
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38335787 and ends at 38370949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PAK4 (19q13.2) / CATSPERG (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(19;19)(q13;q13) PAK4/CATSPERG

External links

Nomenclature
HGNC (Hugo)CATSPERG   25243
Cards
Entrez_Gene (NCBI)CATSPERG  57828  cation channel sperm associated auxiliary subunit gamma
AliasesC19orf15
GeneCards (Weizmann)CATSPERG
Ensembl hg19 (Hinxton)ENSG00000099338 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099338 [Gene_View]  chr19:38335787-38370949 [Contig_View]  CATSPERG [Vega]
ICGC DataPortalENSG00000099338
TCGA cBioPortalCATSPERG
AceView (NCBI)CATSPERG
Genatlas (Paris)CATSPERG
WikiGenes57828
SOURCE (Princeton)CATSPERG
Genetics Home Reference (NIH)CATSPERG
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPERG  -     chr19:38335787-38370949 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPERG  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblCATSPERG - 19q13.2 [CytoView hg19]  CATSPERG - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBICATSPERG [Mapview hg19]  CATSPERG [Mapview hg38]
OMIM613452   
Gene and transcription
Genbank (Entrez)AK096218 AK128039 AK128220 AK310460 AL133023
RefSeq transcript (Entrez)NM_001330496 NM_021185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPERG
Cluster EST : UnigeneHs.324335 [ NCBI ]
CGAP (NCI)Hs.324335
Alternative Splicing GalleryENSG00000099338
Gene ExpressionCATSPERG [ NCBI-GEO ]   CATSPERG [ EBI - ARRAY_EXPRESS ]   CATSPERG [ SEEK ]   CATSPERG [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPERG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57828
GTEX Portal (Tissue expression)CATSPERG
Human Protein AtlasENSG00000099338-CATSPERG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRH7
Splice isoforms : SwissVarQ6ZRH7
PhosPhoSitePlusQ6ZRH7
Domains : Interpro (EBI)CATSPERG   
Domain families : Pfam (Sanger)CATSPERG (PF15064)   
Domain families : Pfam (NCBI)pfam15064   
Conserved Domain (NCBI)CATSPERG
DMDM Disease mutations57828
Blocks (Seattle)CATSPERG
SuperfamilyQ6ZRH7
Human Protein Atlas [tissue]ENSG00000099338-CATSPERG [tissue]
Peptide AtlasQ6ZRH7
HPRD12698
IPIIPI00178100   IPI00021222   IPI00916444   IPI00917258   IPI00917065   IPI00978069   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRH7
IntAct (EBI)Q6ZRH7
FunCoupENSG00000099338
BioGRIDCATSPERG
STRING (EMBL)CATSPERG
ZODIACCATSPERG
Ontologies - Pathways
QuickGOQ6ZRH7
Ontology : AmiGOplasma membrane  multicellular organism development  spermatogenesis  cell differentiation  response to progesterone  sperm-egg recognition  CatSper complex  sperm principal piece  
Ontology : EGO-EBIplasma membrane  multicellular organism development  spermatogenesis  cell differentiation  response to progesterone  sperm-egg recognition  CatSper complex  sperm principal piece  
NDEx NetworkCATSPERG
Atlas of Cancer Signalling NetworkCATSPERG
Wikipedia pathwaysCATSPERG
Orthology - Evolution
OrthoDB57828
GeneTree (enSembl)ENSG00000099338
Phylogenetic Trees/Animal Genes : TreeFamCATSPERG
HOVERGENQ6ZRH7
HOGENOMQ6ZRH7
Homologs : HomoloGeneCATSPERG
Homology/Alignments : Family Browser (UCSC)CATSPERG
Gene fusions - Rearrangements
Fusion : QuiverCATSPERG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPERG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPERG
dbVarCATSPERG
ClinVarCATSPERG
1000_GenomesCATSPERG 
Exome Variant ServerCATSPERG
ExAC (Exome Aggregation Consortium)ENSG00000099338
GNOMAD BrowserENSG00000099338
Genetic variants : HAPMAP57828
Genomic Variants (DGV)CATSPERG [DGVbeta]
DECIPHERCATSPERG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPERG 
Mutations
ICGC Data PortalCATSPERG 
TCGA Data PortalCATSPERG 
Broad Tumor PortalCATSPERG
OASIS PortalCATSPERG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCATSPERG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCATSPERG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CATSPERG
DgiDB (Drug Gene Interaction Database)CATSPERG
DoCM (Curated mutations)CATSPERG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPERG (select a term)
intoGenCATSPERG
Cancer3DCATSPERG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613452   
Orphanet
DisGeNETCATSPERG
MedgenCATSPERG
Genetic Testing Registry CATSPERG
NextProtQ6ZRH7 [Medical]
TSGene57828
GENETestsCATSPERG
Target ValidationCATSPERG
Huge Navigator CATSPERG [HugePedia]
snp3D : Map Gene to Disease57828
BioCentury BCIQCATSPERG
ClinGenCATSPERG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57828
Chemical/Pharm GKB GenePA165393235
Clinical trialCATSPERG
Miscellaneous
canSAR (ICR)CATSPERG (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPERG
EVEXCATSPERG
GoPubMedCATSPERG
iHOPCATSPERG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:13:47 CET 2018
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