Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CATSPERZ (catsper channel auxiliary subunit zeta)

Identity

Other aliasC11orf20
TEX40
HGNC (Hugo) CATSPERZ
LocusID (NCBI) 25858
Atlas_Id 56877
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64300391 and ends at 64304767 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CATSPERZ   19231
Cards
Entrez_Gene (NCBI)CATSPERZ  25858  catsper channel auxiliary subunit zeta
AliasesC11orf20; TEX40
GeneCards (Weizmann)CATSPERZ
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:64300391-64304767 [Contig_View]  CATSPERZ [Vega]
TCGA cBioPortalCATSPERZ
AceView (NCBI)CATSPERZ
Genatlas (Paris)CATSPERZ
WikiGenes25858
SOURCE (Princeton)CATSPERZ
Genetics Home Reference (NIH)CATSPERZ
Genomic and cartography
GoldenPath hg38 (UCSC)CATSPERZ  -     chr11:64300391-64304767 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CATSPERZ  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblCATSPERZ - 11q13.1 [CytoView hg19]  CATSPERZ - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBICATSPERZ [Mapview hg19]  CATSPERZ [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117564 AM392988
RefSeq transcript (Entrez)NM_001039496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CATSPERZ
Cluster EST : UnigeneHs.97174 [ NCBI ]
CGAP (NCI)Hs.97174
Gene ExpressionCATSPERZ [ NCBI-GEO ]   CATSPERZ [ EBI - ARRAY_EXPRESS ]   CATSPERZ [ SEEK ]   CATSPERZ [ MEM ]
Gene Expression Viewer (FireBrowse)CATSPERZ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25858
GTEX Portal (Tissue expression)CATSPERZ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTU4
Splice isoforms : SwissVarQ9NTU4
PhosPhoSitePlusQ9NTU4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CATSPERZ
DMDM Disease mutations25858
Blocks (Seattle)CATSPERZ
SuperfamilyQ9NTU4
Peptide AtlasQ9NTU4
IPIIPI00003330   IPI01010869   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTU4
IntAct (EBI)Q9NTU4
BioGRIDCATSPERZ
STRING (EMBL)CATSPERZ
ZODIACCATSPERZ
Ontologies - Pathways
QuickGOQ9NTU4
Ontology : AmiGOcytoplasm  male meiotic nuclear division  spermatogenesis  cell differentiation  
Ontology : EGO-EBIcytoplasm  male meiotic nuclear division  spermatogenesis  cell differentiation  
NDEx NetworkCATSPERZ
Atlas of Cancer Signalling NetworkCATSPERZ
Wikipedia pathwaysCATSPERZ
Orthology - Evolution
OrthoDB25858
Phylogenetic Trees/Animal Genes : TreeFamCATSPERZ
HOVERGENQ9NTU4
HOGENOMQ9NTU4
Homologs : HomoloGeneCATSPERZ
Homology/Alignments : Family Browser (UCSC)CATSPERZ
Gene fusions - Rearrangements
Fusion : MitelmanESRRA/TEX40 [11q13.1/11q13.1]  [t(11;11)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCATSPERZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CATSPERZ
dbVarCATSPERZ
ClinVarCATSPERZ
1000_GenomesCATSPERZ 
Exome Variant ServerCATSPERZ
ExAC (Exome Aggregation Consortium)CATSPERZ (select the gene name)
Genetic variants : HAPMAP25858
Genomic Variants (DGV)CATSPERZ [DGVbeta]
DECIPHERCATSPERZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCATSPERZ 
Mutations
ICGC Data PortalCATSPERZ 
TCGA Data PortalCATSPERZ 
Broad Tumor PortalCATSPERZ
OASIS PortalCATSPERZ [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCATSPERZ
BioMutasearch CATSPERZ
DgiDB (Drug Gene Interaction Database)CATSPERZ
DoCM (Curated mutations)CATSPERZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CATSPERZ (select a term)
intoGenCATSPERZ
Cancer3DCATSPERZ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCATSPERZ
Genetic Testing Registry CATSPERZ
NextProtQ9NTU4 [Medical]
TSGene25858
GENETestsCATSPERZ
Target ValidationCATSPERZ
Huge Navigator CATSPERZ [HugePedia]
snp3D : Map Gene to Disease25858
BioCentury BCIQCATSPERZ
ClinGenCATSPERZ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25858
Chemical/Pharm GKB GenePA164716726
Clinical trialCATSPERZ
Miscellaneous
canSAR (ICR)CATSPERZ (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCATSPERZ
EVEXCATSPERZ
GoPubMedCATSPERZ
iHOPCATSPERZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:00:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.