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CAVIN2 (caveolae associated protein 2)

Identity

Other aliasPS-p68
SDPR
SDR
cavin-2
HGNC (Hugo) CAVIN2
LocusID (NCBI) 8436
Atlas_Id 56819
Location 2q32.3  [Link to chromosome band 2q32]
Location_base_pair Starts at 191834306 and ends at 191847280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAVIN2   10690
Cards
Entrez_Gene (NCBI)CAVIN2  8436  caveolae associated protein 2
AliasesPS-p68; SDPR; SDR; cavin-2
GeneCards (Weizmann)CAVIN2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:191834306-191847280 [Contig_View]  CAVIN2 [Vega]
TCGA cBioPortalCAVIN2
AceView (NCBI)CAVIN2
Genatlas (Paris)CAVIN2
WikiGenes8436
SOURCE (Princeton)CAVIN2
Genetics Home Reference (NIH)CAVIN2
Genomic and cartography
GoldenPath hg38 (UCSC)CAVIN2  -     chr2:191834306-191847280 -  2q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAVIN2  -     2q32.3   [Description]    (hg19-Feb_2009)
EnsemblCAVIN2 - 2q32.3 [CytoView hg19]  CAVIN2 - 2q32.3 [CytoView hg38]
Mapping of homologs : NCBICAVIN2 [Mapview hg19]  CAVIN2 [Mapview hg38]
OMIM606728   
Gene and transcription
Genbank (Entrez)AF085481 AK026943 AK290378 AK311055 BC016475
RefSeq transcript (Entrez)NM_004657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAVIN2
Cluster EST : UnigeneHs.26530 [ NCBI ]
CGAP (NCI)Hs.26530
Gene ExpressionCAVIN2 [ NCBI-GEO ]   CAVIN2 [ EBI - ARRAY_EXPRESS ]   CAVIN2 [ SEEK ]   CAVIN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CAVIN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8436
GTEX Portal (Tissue expression)CAVIN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95810
Splice isoforms : SwissVarO95810
PhosPhoSitePlusO95810
Domains : Interpro (EBI)Cavin_fam    SDPR   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)CAVIN2
DMDM Disease mutations8436
Blocks (Seattle)CAVIN2
SuperfamilyO95810
Peptide AtlasO95810
IPIIPI00005809   
Protein Interaction databases
DIP (DOE-UCLA)O95810
IntAct (EBI)O95810
BioGRIDCAVIN2
STRING (EMBL)CAVIN2
ZODIACCAVIN2
Ontologies - Pathways
QuickGOO95810
Ontology : AmiGOphosphatidylserine binding  protein kinase C binding  protein binding  phospholipid binding  cytoplasm  cytosol  caveola  membrane raft  
Ontology : EGO-EBIphosphatidylserine binding  protein kinase C binding  protein binding  phospholipid binding  cytoplasm  cytosol  caveola  membrane raft  
NDEx NetworkCAVIN2
Atlas of Cancer Signalling NetworkCAVIN2
Wikipedia pathwaysCAVIN2
Orthology - Evolution
OrthoDB8436
Phylogenetic Trees/Animal Genes : TreeFamCAVIN2
HOVERGENO95810
HOGENOMO95810
Homologs : HomoloGeneCAVIN2
Homology/Alignments : Family Browser (UCSC)CAVIN2
Gene fusions - Rearrangements
Tumor Fusion PortalCAVIN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAVIN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAVIN2
dbVarCAVIN2
ClinVarCAVIN2
1000_GenomesCAVIN2 
Exome Variant ServerCAVIN2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP8436
Genomic Variants (DGV)CAVIN2 [DGVbeta]
DECIPHERCAVIN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAVIN2 
Mutations
ICGC Data PortalCAVIN2 
TCGA Data PortalCAVIN2 
Broad Tumor PortalCAVIN2
OASIS PortalCAVIN2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCAVIN2
BioMutasearch CAVIN2
DgiDB (Drug Gene Interaction Database)CAVIN2
DoCM (Curated mutations)CAVIN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAVIN2 (select a term)
intoGenCAVIN2
Cancer3DCAVIN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606728   
Orphanet
DisGeNETCAVIN2
MedgenCAVIN2
Genetic Testing Registry CAVIN2
NextProtO95810 [Medical]
TSGene8436
GENETestsCAVIN2
Target ValidationCAVIN2
Huge Navigator CAVIN2 [HugePedia]
snp3D : Map Gene to Disease8436
BioCentury BCIQCAVIN2
ClinGenCAVIN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8436
Chemical/Pharm GKB GenePA35615
Clinical trialCAVIN2
Miscellaneous
canSAR (ICR)CAVIN2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAVIN2
EVEXCAVIN2
GoPubMedCAVIN2
iHOPCAVIN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:29:32 CET 2017

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