Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CAVIN3 (caveolae associated protein 3)

Identity

Other aliasHSRBC
PRKCDBP
SRBC
cavin-3
HGNC (Hugo) CAVIN3
LocusID (NCBI) 112464
Atlas_Id 56723
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6318946 and ends at 6320510 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CAVIN3   9400
Cards
Entrez_Gene (NCBI)CAVIN3  112464  caveolae associated protein 3
AliasesHSRBC; PRKCDBP; SRBC; cavin-3
GeneCards (Weizmann)CAVIN3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:6318946-6320510 [Contig_View]  CAVIN3 [Vega]
TCGA cBioPortalCAVIN3
AceView (NCBI)CAVIN3
Genatlas (Paris)CAVIN3
WikiGenes112464
SOURCE (Princeton)CAVIN3
Genetics Home Reference (NIH)CAVIN3
Genomic and cartography
GoldenPath hg38 (UCSC)CAVIN3  -     chr11:6318946-6320510 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAVIN3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblCAVIN3 - 11p15.4 [CytoView hg19]  CAVIN3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBICAVIN3 [Mapview hg19]  CAVIN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339881 BC011585 BC038387 BQ434360
RefSeq transcript (Entrez)NM_145040
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAVIN3
Cluster EST : UnigeneHs.434044 [ NCBI ]
CGAP (NCI)Hs.434044
Gene ExpressionCAVIN3 [ NCBI-GEO ]   CAVIN3 [ EBI - ARRAY_EXPRESS ]   CAVIN3 [ SEEK ]   CAVIN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CAVIN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112464
GTEX Portal (Tissue expression)CAVIN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969G5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969G5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969G5
Splice isoforms : SwissVarQ969G5
PhosPhoSitePlusQ969G5
Domains : Interpro (EBI)Cavin_fam    SRBC   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)CAVIN3
DMDM Disease mutations112464
Blocks (Seattle)CAVIN3
SuperfamilyQ969G5
Peptide AtlasQ969G5
IPIIPI00056334   IPI00976461   
Protein Interaction databases
DIP (DOE-UCLA)Q969G5
IntAct (EBI)Q969G5
BioGRIDCAVIN3
STRING (EMBL)CAVIN3
ZODIACCAVIN3
Ontologies - Pathways
QuickGOQ969G5
Ontology : AmiGOprotein kinase C binding  protein binding  cytoplasm  cytoplasm  cytosol  caveola  cortical actin cytoskeleton organization  circadian regulation of gene expression  protein complex  negative regulation of protein kinase B signaling  positive regulation of ERK1 and ERK2 cascade  negative regulation of fermentation  
Ontology : EGO-EBIprotein kinase C binding  protein binding  cytoplasm  cytoplasm  cytosol  caveola  cortical actin cytoskeleton organization  circadian regulation of gene expression  protein complex  negative regulation of protein kinase B signaling  positive regulation of ERK1 and ERK2 cascade  negative regulation of fermentation  
NDEx NetworkCAVIN3
Atlas of Cancer Signalling NetworkCAVIN3
Wikipedia pathwaysCAVIN3
Orthology - Evolution
OrthoDB112464
Phylogenetic Trees/Animal Genes : TreeFamCAVIN3
HOVERGENQ969G5
HOGENOMQ969G5
Homologs : HomoloGeneCAVIN3
Homology/Alignments : Family Browser (UCSC)CAVIN3
Gene fusions - Rearrangements
Fusion : QuiverCAVIN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAVIN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAVIN3
dbVarCAVIN3
ClinVarCAVIN3
1000_GenomesCAVIN3 
Exome Variant ServerCAVIN3
Genetic variants : HAPMAP112464
Genomic Variants (DGV)CAVIN3 [DGVbeta]
DECIPHERCAVIN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAVIN3 
Mutations
ICGC Data PortalCAVIN3 
TCGA Data PortalCAVIN3 
Broad Tumor PortalCAVIN3
OASIS PortalCAVIN3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCAVIN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAVIN3
DgiDB (Drug Gene Interaction Database)CAVIN3
DoCM (Curated mutations)CAVIN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAVIN3 (select a term)
intoGenCAVIN3
Cancer3DCAVIN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCAVIN3
MedgenCAVIN3
Genetic Testing Registry CAVIN3
NextProtQ969G5 [Medical]
TSGene112464
GENETestsCAVIN3
Target ValidationCAVIN3
Huge Navigator CAVIN3 [HugePedia]
snp3D : Map Gene to Disease112464
BioCentury BCIQCAVIN3
ClinGenCAVIN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112464
Chemical/Pharm GKB GenePA33764
Clinical trialCAVIN3
Miscellaneous
canSAR (ICR)CAVIN3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAVIN3
EVEXCAVIN3
GoPubMedCAVIN3
iHOPCAVIN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:04:30 CET 2018
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