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CAVIN4 (caveolae associated protein 4)

Identity

Other aliasMURC
cavin-4
HGNC (Hugo) CAVIN4
LocusID (NCBI) 347273
Atlas_Id 56842
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 100578079 and ends at 100588387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CAVIN4   33742
Cards
Entrez_Gene (NCBI)CAVIN4  347273  caveolae associated protein 4
AliasesMURC; cavin-4
GeneCards (Weizmann)CAVIN4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:100578079-100588387 [Contig_View]  CAVIN4 [Vega]
TCGA cBioPortalCAVIN4
AceView (NCBI)CAVIN4
Genatlas (Paris)CAVIN4
WikiGenes347273
SOURCE (Princeton)CAVIN4
Genetics Home Reference (NIH)CAVIN4
Genomic and cartography
GoldenPath hg38 (UCSC)CAVIN4  -     chr9:100578079-100588387 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CAVIN4  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblCAVIN4 - 9q31.1 [CytoView hg19]  CAVIN4 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBICAVIN4 [Mapview hg19]  CAVIN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA192639 AA446953 AK128238 AK300099 BC090888
RefSeq transcript (Entrez)NM_001018116
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CAVIN4
Cluster EST : UnigeneHs.733374 [ NCBI ]
CGAP (NCI)Hs.733374
Gene ExpressionCAVIN4 [ NCBI-GEO ]   CAVIN4 [ EBI - ARRAY_EXPRESS ]   CAVIN4 [ SEEK ]   CAVIN4 [ MEM ]
Gene Expression Viewer (FireBrowse)CAVIN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347273
GTEX Portal (Tissue expression)CAVIN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKX8
Splice isoforms : SwissVarQ5BKX8
PhosPhoSitePlusQ5BKX8
Domains : Interpro (EBI)Cavin_fam    MURC   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)CAVIN4
DMDM Disease mutations347273
Blocks (Seattle)CAVIN4
SuperfamilyQ5BKX8
Peptide AtlasQ5BKX8
IPIIPI00249656   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKX8
IntAct (EBI)Q5BKX8
BioGRIDCAVIN4
STRING (EMBL)CAVIN4
ZODIACCAVIN4
Ontologies - Pathways
QuickGOQ5BKX8
Ontology : AmiGOcytoplasm  transcription, DNA-templated  muscle organ development  regulation of gene expression  Z disc  cell differentiation  regulation of Rho protein signal transduction  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIcytoplasm  transcription, DNA-templated  muscle organ development  regulation of gene expression  Z disc  cell differentiation  regulation of Rho protein signal transduction  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCAVIN4
Atlas of Cancer Signalling NetworkCAVIN4
Wikipedia pathwaysCAVIN4
Orthology - Evolution
OrthoDB347273
Phylogenetic Trees/Animal Genes : TreeFamCAVIN4
HOVERGENQ5BKX8
HOGENOMQ5BKX8
Homologs : HomoloGeneCAVIN4
Homology/Alignments : Family Browser (UCSC)CAVIN4
Gene fusions - Rearrangements
Tumor Fusion PortalCAVIN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCAVIN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CAVIN4
dbVarCAVIN4
ClinVarCAVIN4
1000_GenomesCAVIN4 
Exome Variant ServerCAVIN4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP347273
Genomic Variants (DGV)CAVIN4 [DGVbeta]
DECIPHERCAVIN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCAVIN4 
Mutations
ICGC Data PortalCAVIN4 
TCGA Data PortalCAVIN4 
Broad Tumor PortalCAVIN4
OASIS PortalCAVIN4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCAVIN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CAVIN4
DgiDB (Drug Gene Interaction Database)CAVIN4
DoCM (Curated mutations)CAVIN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CAVIN4 (select a term)
intoGenCAVIN4
Cancer3DCAVIN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCAVIN4
MedgenCAVIN4
Genetic Testing Registry CAVIN4
NextProtQ5BKX8 [Medical]
TSGene347273
GENETestsCAVIN4
Target ValidationCAVIN4
Huge Navigator CAVIN4 [HugePedia]
snp3D : Map Gene to Disease347273
BioCentury BCIQCAVIN4
ClinGenCAVIN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347273
Chemical/Pharm GKB GenePA164723237
Clinical trialCAVIN4
Miscellaneous
canSAR (ICR)CAVIN4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCAVIN4
EVEXCAVIN4
GoPubMedCAVIN4
iHOPCAVIN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:06:07 CET 2017

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