Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CBARP (CACN beta subunit associated regulatory protein)

Identity

Alias_namesC19orf26
chromosome 19 open reading frame 26
calcium channel, voltage-dependent, beta subunit associated regulatory protein
Alias_symbol (synonym)MGC40084
DOS
BARP
Other alias
HGNC (Hugo) CBARP
LocusID (NCBI) 255057
Atlas_Id 77755
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1229948 and ends at 1237991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBARP (19p13.3) / SBNO2 (19p13.3)SBNO2 (19p13.3) / CBARP (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBARP   28617
Cards
Entrez_Gene (NCBI)CBARP  255057  CACN beta subunit associated regulatory protein
AliasesBARP; C19orf26; DOS
GeneCards (Weizmann)CBARP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:1229948-1237991 [Contig_View]  CBARP [Vega]
TCGA cBioPortalCBARP
AceView (NCBI)CBARP
Genatlas (Paris)CBARP
WikiGenes255057
SOURCE (Princeton)CBARP
Genetics Home Reference (NIH)CBARP
Genomic and cartography
GoldenPath hg38 (UCSC)CBARP  -     chr19:1229948-1237991 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBARP  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCBARP - 19p13.3 [CytoView hg19]  CBARP - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICBARP [Mapview hg19]  CBARP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW163263 BC028156 BM263341 BM743507 BX094586
RefSeq transcript (Entrez)NM_152769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBARP
Cluster EST : UnigeneHs.346575 [ NCBI ]
CGAP (NCI)Hs.346575
Gene ExpressionCBARP [ NCBI-GEO ]   CBARP [ EBI - ARRAY_EXPRESS ]   CBARP [ SEEK ]   CBARP [ MEM ]
Gene Expression Viewer (FireBrowse)CBARP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255057
GTEX Portal (Tissue expression)CBARP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N350   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N350  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N350
Splice isoforms : SwissVarQ8N350
PhosPhoSitePlusQ8N350
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CBARP
DMDM Disease mutations255057
Blocks (Seattle)CBARP
SuperfamilyQ8N350
Peptide AtlasQ8N350
HPRD16627
IPIIPI00420019   IPI00171000   
Protein Interaction databases
DIP (DOE-UCLA)Q8N350
IntAct (EBI)Q8N350
BioGRIDCBARP
STRING (EMBL)CBARP
ZODIACCBARP
Ontologies - Pathways
QuickGOQ8N350
Ontology : AmiGOplasma membrane  integral component of membrane  cell junction  secretory granule  growth cone  synaptic vesicle membrane  ion channel binding  negative regulation of calcium ion-dependent exocytosis  negative regulation of voltage-gated calcium channel activity  negative regulation of calcium ion transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of membrane  cell junction  secretory granule  growth cone  synaptic vesicle membrane  ion channel binding  negative regulation of calcium ion-dependent exocytosis  negative regulation of voltage-gated calcium channel activity  negative regulation of calcium ion transmembrane transport  
NDEx NetworkCBARP
Atlas of Cancer Signalling NetworkCBARP
Wikipedia pathwaysCBARP
Orthology - Evolution
OrthoDB255057
Phylogenetic Trees/Animal Genes : TreeFamCBARP
HOVERGENQ8N350
HOGENOMQ8N350
Homologs : HomoloGeneCBARP
Homology/Alignments : Family Browser (UCSC)CBARP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBARP
dbVarCBARP
ClinVarCBARP
1000_GenomesCBARP 
Exome Variant ServerCBARP
ExAC (Exome Aggregation Consortium)CBARP (select the gene name)
Genetic variants : HAPMAP255057
Genomic Variants (DGV)CBARP [DGVbeta]
DECIPHERCBARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBARP 
Mutations
ICGC Data PortalCBARP 
TCGA Data PortalCBARP 
Broad Tumor PortalCBARP
OASIS PortalCBARP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCBARP
BioMutasearch CBARP
DgiDB (Drug Gene Interaction Database)CBARP
DoCM (Curated mutations)CBARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBARP (select a term)
intoGenCBARP
Cancer3DCBARP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBARP
Genetic Testing Registry CBARP
NextProtQ8N350 [Medical]
TSGene255057
GENETestsCBARP
Target ValidationCBARP
Huge Navigator CBARP [HugePedia]
snp3D : Map Gene to Disease255057
BioCentury BCIQCBARP
ClinGenCBARP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255057
Chemical/Pharm GKB GenePA134919853
Clinical trialCBARP
Miscellaneous
canSAR (ICR)CBARP (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBARP
EVEXCBARP
GoPubMedCBARP
iHOPCBARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.