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CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2)

Identity

Alias (NCBI)EHT
MTGR1
ZMYND3
p85
HGNC (Hugo) CBFA2T2
HGNC Alias symbMTGR1
ZMYND3
HGNC Previous namecore-binding factor, runt domain, alpha subunit 2; translocated to, 2
 CBFA2/RUNX1 translocation partner 2
LocusID (NCBI) 9139
Atlas_Id 934
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33562365 and ends at 33650031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACAD11 (3q22.1) / CBFA2T2 (20q11.21)ADAMTS20 (12q12) / CBFA2T2 (20q11.21)CBFA2T2 (20q11.21) / CBFA2T2 (20q11.21)
CBFA2T2 (20q11.21) / DOK5 (20q13.2)CBFA2T2 (20q11.21) / HM13 (20q11.21)CBFA2T2 (20q11.21) / RTN4 (2p16.1)
CHMP4B (20q11.22) / CBFA2T2 (20q11.21)DNAJC3 (13q32.1) / CBFA2T2 (20q11.21)MARK3 (14q32.32) / CBFA2T2 (20q11.21)
RUNX1 (21q22.12) / CBFA2T2 (20q11.21)ZBTB2 (6q25.1) / CBFA2T2 (20q11.21)ZNF341 (20q11.22) / CBFA2T2 (20q11.21)
CBFA2T2 20q11.21 / DOK5 20q13.2CBFA2T2 20q11.21 / HM13 20q11.21CHMP4B 20q11.22 / CBFA2T2 20q11.21
ZNF341 20q11.22 / CBFA2T2 20q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  ins(21;20)(q22;q11q11) RUNX1/CBFA2T2


External links

Nomenclature
HGNC (Hugo)CBFA2T2   1536
Cards
Entrez_Gene (NCBI)CBFA2T2    CBFA2/RUNX1 partner transcriptional co-repressor 2
AliasesEHT; MTGR1; ZMYND3; p85
GeneCards (Weizmann)CBFA2T2
Ensembl hg19 (Hinxton)ENSG00000078699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000078699 [Gene_View]  ENSG00000078699 [Sequence]  chr20:33562365-33650031 [Contig_View]  CBFA2T2 [Vega]
ICGC DataPortalENSG00000078699
TCGA cBioPortalCBFA2T2
AceView (NCBI)CBFA2T2
Genatlas (Paris)CBFA2T2
SOURCE (Princeton)CBFA2T2
Genetics Home Reference (NIH)CBFA2T2
Genomic and cartography
GoldenPath hg38 (UCSC)CBFA2T2  -     chr20:33562365-33650031 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBFA2T2  -     20q11.22   [Description]    (hg19-Feb_2009)
GoldenPathCBFA2T2 - 20q11.22 [CytoView hg19]  CBFA2T2 - 20q11.22 [CytoView hg38]
ImmunoBaseENSG00000078699
Genome Data Viewer NCBICBFA2T2 [Mapview hg19]  
OMIM603672   
Gene and transcription
Genbank (Entrez)AB209306 AF013970 AF039200 AF052210 AF052211
RefSeq transcript (Entrez)NM_001032999 NM_001039709 NM_005093 NM_175864
Consensus coding sequences : CCDS (NCBI)CBFA2T2
Gene ExpressionCBFA2T2 [ NCBI-GEO ]   CBFA2T2 [ EBI - ARRAY_EXPRESS ]   CBFA2T2 [ SEEK ]   CBFA2T2 [ MEM ]
Gene Expression Viewer (FireBrowse)CBFA2T2 [ Firebrowse - Broad ]
GenevisibleExpression of CBFA2T2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9139
GTEX Portal (Tissue expression)CBFA2T2
Human Protein AtlasENSG00000078699-CBFA2T2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CBFA2T2
Human Protein Atlas [tissue]ENSG00000078699-CBFA2T2 [tissue]
HPRD04721
Protein Interaction databases
BioGRIDCBFA2T2
STRING (EMBL)CBFA2T2
ZODIACCBFA2T2
Ontologies - Pathways
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCBFA2T2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:02:23 CEST 2021

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