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CBLN1 (cerebellin 1 precursor)

Identity

Other alias-
HGNC (Hugo) CBLN1
LocusID (NCBI) 869
Atlas_Id 61442
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 49277918 and ends at 49281831 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBLN1   1543
Cards
Entrez_Gene (NCBI)CBLN1  869  cerebellin 1 precursor
Aliases
GeneCards (Weizmann)CBLN1
Ensembl hg19 (Hinxton)ENSG00000102924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102924 [Gene_View]  chr16:49277918-49281831 [Contig_View]  CBLN1 [Vega]
ICGC DataPortalENSG00000102924
TCGA cBioPortalCBLN1
AceView (NCBI)CBLN1
Genatlas (Paris)CBLN1
WikiGenes869
SOURCE (Princeton)CBLN1
Genetics Home Reference (NIH)CBLN1
Genomic and cartography
GoldenPath hg38 (UCSC)CBLN1  -     chr16:49277918-49281831 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBLN1  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblCBLN1 - 16q12.1 [CytoView hg19]  CBLN1 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBICBLN1 [Mapview hg19]  CBLN1 [Mapview hg38]
OMIM600432   
Gene and transcription
Genbank (Entrez)AI147523 AK314276 BC093692 BC093718 CN281334
RefSeq transcript (Entrez)NM_004352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBLN1
Cluster EST : UnigeneHs.458423 [ NCBI ]
CGAP (NCI)Hs.458423
Alternative Splicing GalleryENSG00000102924
Gene ExpressionCBLN1 [ NCBI-GEO ]   CBLN1 [ EBI - ARRAY_EXPRESS ]   CBLN1 [ SEEK ]   CBLN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CBLN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)869
GTEX Portal (Tissue expression)CBLN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23435   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23435  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23435
Splice isoforms : SwissVarP23435
PhosPhoSitePlusP23435
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)   
Domain families : Pfam (NCBI)pfam00386   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CBLN1
DMDM Disease mutations869
Blocks (Seattle)CBLN1
PDB (SRS)5KC5    5KC6    5KC7    5KCA   
PDB (PDBSum)5KC5    5KC6    5KC7    5KCA   
PDB (IMB)5KC5    5KC6    5KC7    5KCA   
PDB (RSDB)5KC5    5KC6    5KC7    5KCA   
Structural Biology KnowledgeBase5KC5    5KC6    5KC7    5KCA   
SCOP (Structural Classification of Proteins)5KC5    5KC6    5KC7    5KCA   
CATH (Classification of proteins structures)5KC5    5KC6    5KC7    5KCA   
SuperfamilyP23435
Human Protein AtlasENSG00000102924
Peptide AtlasP23435
HPRD02697
IPIIPI00011605   
Protein Interaction databases
DIP (DOE-UCLA)P23435
IntAct (EBI)P23435
FunCoupENSG00000102924
BioGRIDCBLN1
STRING (EMBL)CBLN1
ZODIACCBLN1
Ontologies - Pathways
QuickGOP23435
Ontology : AmiGOextracellular region  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  chemical synaptic transmission  nervous system development  protein secretion  cerebellar granule cell differentiation  cell junction  protein homodimerization activity  postsynaptic membrane  positive regulation of synapse assembly  
Ontology : EGO-EBIextracellular region  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  chemical synaptic transmission  nervous system development  protein secretion  cerebellar granule cell differentiation  cell junction  protein homodimerization activity  postsynaptic membrane  positive regulation of synapse assembly  
NDEx NetworkCBLN1
Atlas of Cancer Signalling NetworkCBLN1
Wikipedia pathwaysCBLN1
Orthology - Evolution
OrthoDB869
GeneTree (enSembl)ENSG00000102924
Phylogenetic Trees/Animal Genes : TreeFamCBLN1
HOVERGENP23435
HOGENOMP23435
Homologs : HomoloGeneCBLN1
Homology/Alignments : Family Browser (UCSC)CBLN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBLN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBLN1
dbVarCBLN1
ClinVarCBLN1
1000_GenomesCBLN1 
Exome Variant ServerCBLN1
ExAC (Exome Aggregation Consortium)CBLN1 (select the gene name)
Genetic variants : HAPMAP869
Genomic Variants (DGV)CBLN1 [DGVbeta]
DECIPHERCBLN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBLN1 
Mutations
ICGC Data PortalCBLN1 
TCGA Data PortalCBLN1 
Broad Tumor PortalCBLN1
OASIS PortalCBLN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBLN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBLN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBLN1
DgiDB (Drug Gene Interaction Database)CBLN1
DoCM (Curated mutations)CBLN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBLN1 (select a term)
intoGenCBLN1
Cancer3DCBLN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600432   
Orphanet
MedgenCBLN1
Genetic Testing Registry CBLN1
NextProtP23435 [Medical]
TSGene869
GENETestsCBLN1
Huge Navigator CBLN1 [HugePedia]
snp3D : Map Gene to Disease869
BioCentury BCIQCBLN1
ClinGenCBLN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD869
Chemical/Pharm GKB GenePA26118
Clinical trialCBLN1
Miscellaneous
canSAR (ICR)CBLN1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBLN1
EVEXCBLN1
GoPubMedCBLN1
iHOPCBLN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:04:27 CEST 2017

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