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CBLN2 (cerebellin 2 precursor)

Identity

Other alias-
HGNC (Hugo) CBLN2
LocusID (NCBI) 147381
Atlas_Id 61443
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 72536680 and ends at 72544488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBLN2   1544
Cards
Entrez_Gene (NCBI)CBLN2  147381  cerebellin 2 precursor
Aliases
GeneCards (Weizmann)CBLN2
Ensembl hg19 (Hinxton)ENSG00000141668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141668 [Gene_View]  chr18:72536680-72544488 [Contig_View]  CBLN2 [Vega]
ICGC DataPortalENSG00000141668
TCGA cBioPortalCBLN2
AceView (NCBI)CBLN2
Genatlas (Paris)CBLN2
WikiGenes147381
SOURCE (Princeton)CBLN2
Genetics Home Reference (NIH)CBLN2
Genomic and cartography
GoldenPath hg38 (UCSC)CBLN2  -     chr18:72536680-72544488 -  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBLN2  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblCBLN2 - 18q22.3 [CytoView hg19]  CBLN2 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBICBLN2 [Mapview hg19]  CBLN2 [Mapview hg38]
OMIM600433   
Gene and transcription
Genbank (Entrez)AK125422 AK291364 AY359074 BC035789 BC110843
RefSeq transcript (Entrez)NM_182511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBLN2
Cluster EST : UnigeneHs.569851 [ NCBI ]
CGAP (NCI)Hs.569851
Alternative Splicing GalleryENSG00000141668
Gene ExpressionCBLN2 [ NCBI-GEO ]   CBLN2 [ EBI - ARRAY_EXPRESS ]   CBLN2 [ SEEK ]   CBLN2 [ MEM ]
Gene Expression Viewer (FireBrowse)CBLN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147381
GTEX Portal (Tissue expression)CBLN2
Human Protein AtlasENSG00000141668-CBLN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUK8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUK8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUK8
Splice isoforms : SwissVarQ8IUK8
PhosPhoSitePlusQ8IUK8
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)   
Domain families : Pfam (NCBI)pfam00386   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CBLN2
DMDM Disease mutations147381
Blocks (Seattle)CBLN2
SuperfamilyQ8IUK8
Human Protein Atlas [tissue]ENSG00000141668-CBLN2 [tissue]
Peptide AtlasQ8IUK8
HPRD15970
IPIIPI00216774   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUK8
IntAct (EBI)Q8IUK8
FunCoupENSG00000141668
BioGRIDCBLN2
STRING (EMBL)CBLN2
ZODIACCBLN2
Ontologies - Pathways
QuickGOQ8IUK8
Ontology : AmiGOextracellular space  positive regulation of synapse assembly  
Ontology : EGO-EBIextracellular space  positive regulation of synapse assembly  
NDEx NetworkCBLN2
Atlas of Cancer Signalling NetworkCBLN2
Wikipedia pathwaysCBLN2
Orthology - Evolution
OrthoDB147381
GeneTree (enSembl)ENSG00000141668
Phylogenetic Trees/Animal Genes : TreeFamCBLN2
HOVERGENQ8IUK8
HOGENOMQ8IUK8
Homologs : HomoloGeneCBLN2
Homology/Alignments : Family Browser (UCSC)CBLN2
Gene fusions - Rearrangements
Tumor Fusion PortalCBLN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBLN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBLN2
dbVarCBLN2
ClinVarCBLN2
1000_GenomesCBLN2 
Exome Variant ServerCBLN2
ExAC (Exome Aggregation Consortium)ENSG00000141668
GNOMAD BrowserENSG00000141668
Genetic variants : HAPMAP147381
Genomic Variants (DGV)CBLN2 [DGVbeta]
DECIPHERCBLN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBLN2 
Mutations
ICGC Data PortalCBLN2 
TCGA Data PortalCBLN2 
Broad Tumor PortalCBLN2
OASIS PortalCBLN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBLN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBLN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBLN2
DgiDB (Drug Gene Interaction Database)CBLN2
DoCM (Curated mutations)CBLN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBLN2 (select a term)
intoGenCBLN2
Cancer3DCBLN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600433   
Orphanet
DisGeNETCBLN2
MedgenCBLN2
Genetic Testing Registry CBLN2
NextProtQ8IUK8 [Medical]
TSGene147381
GENETestsCBLN2
Target ValidationCBLN2
Huge Navigator CBLN2 [HugePedia]
snp3D : Map Gene to Disease147381
BioCentury BCIQCBLN2
ClinGenCBLN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147381
Chemical/Pharm GKB GenePA26119
Clinical trialCBLN2
Miscellaneous
canSAR (ICR)CBLN2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBLN2
EVEXCBLN2
GoPubMedCBLN2
iHOPCBLN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:37:22 CET 2017

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