Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CBLN3 (cerebellin 3 precursor)

Identity

Other aliasPRO1486
HGNC (Hugo) CBLN3
LocusID (NCBI) 643866
Atlas_Id 61444
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24426534 and ends at 24429525 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBLN3   20146
Cards
Entrez_Gene (NCBI)CBLN3  643866  cerebellin 3 precursor
AliasesPRO1486
GeneCards (Weizmann)CBLN3
Ensembl hg19 (Hinxton)ENSG00000139899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139899 [Gene_View]  chr14:24426534-24429525 [Contig_View]  CBLN3 [Vega]
ICGC DataPortalENSG00000139899
TCGA cBioPortalCBLN3
AceView (NCBI)CBLN3
Genatlas (Paris)CBLN3
WikiGenes643866
SOURCE (Princeton)CBLN3
Genetics Home Reference (NIH)CBLN3
Genomic and cartography
GoldenPath hg38 (UCSC)CBLN3  -     chr14:24426534-24429525 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBLN3  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblCBLN3 - 14q12 [CytoView hg19]  CBLN3 - 14q12 [CytoView hg38]
Mapping of homologs : NCBICBLN3 [Mapview hg19]  CBLN3 [Mapview hg38]
OMIM612978   
Gene and transcription
Genbank (Entrez)AY359070 CD368047
RefSeq transcript (Entrez)NM_001039771
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBLN3
Cluster EST : UnigeneHs.207603 [ NCBI ]
CGAP (NCI)Hs.207603
Alternative Splicing GalleryENSG00000139899
Gene ExpressionCBLN3 [ NCBI-GEO ]   CBLN3 [ EBI - ARRAY_EXPRESS ]   CBLN3 [ SEEK ]   CBLN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CBLN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643866
GTEX Portal (Tissue expression)CBLN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UW01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UW01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UW01
Splice isoforms : SwissVarQ6UW01
PhosPhoSitePlusQ6UW01
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)   
Domain families : Pfam (NCBI)pfam00386   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CBLN3
DMDM Disease mutations643866
Blocks (Seattle)CBLN3
SuperfamilyQ6UW01
Human Protein AtlasENSG00000139899
Peptide AtlasQ6UW01
IPIIPI00402157   IPI01026426   
Protein Interaction databases
DIP (DOE-UCLA)Q6UW01
IntAct (EBI)Q6UW01
FunCoupENSG00000139899
BioGRIDCBLN3
STRING (EMBL)CBLN3
ZODIACCBLN3
Ontologies - Pathways
QuickGOQ6UW01
Ontology : AmiGOextracellular space  endoplasmic reticulum  Golgi apparatus  cell junction  synapse  
Ontology : EGO-EBIextracellular space  endoplasmic reticulum  Golgi apparatus  cell junction  synapse  
NDEx NetworkCBLN3
Atlas of Cancer Signalling NetworkCBLN3
Wikipedia pathwaysCBLN3
Orthology - Evolution
OrthoDB643866
GeneTree (enSembl)ENSG00000139899
Phylogenetic Trees/Animal Genes : TreeFamCBLN3
HOVERGENQ6UW01
HOGENOMQ6UW01
Homologs : HomoloGeneCBLN3
Homology/Alignments : Family Browser (UCSC)CBLN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBLN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBLN3
dbVarCBLN3
ClinVarCBLN3
1000_GenomesCBLN3 
Exome Variant ServerCBLN3
ExAC (Exome Aggregation Consortium)CBLN3 (select the gene name)
Genetic variants : HAPMAP643866
Genomic Variants (DGV)CBLN3 [DGVbeta]
DECIPHERCBLN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBLN3 
Mutations
ICGC Data PortalCBLN3 
TCGA Data PortalCBLN3 
Broad Tumor PortalCBLN3
OASIS PortalCBLN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBLN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBLN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBLN3
DgiDB (Drug Gene Interaction Database)CBLN3
DoCM (Curated mutations)CBLN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBLN3 (select a term)
intoGenCBLN3
Cancer3DCBLN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612978   
Orphanet
MedgenCBLN3
Genetic Testing Registry CBLN3
NextProtQ6UW01 [Medical]
TSGene643866
GENETestsCBLN3
Huge Navigator CBLN3 [HugePedia]
snp3D : Map Gene to Disease643866
BioCentury BCIQCBLN3
ClinGenCBLN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643866
Chemical/Pharm GKB GenePA134885212
Clinical trialCBLN3
Miscellaneous
canSAR (ICR)CBLN3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBLN3
EVEXCBLN3
GoPubMedCBLN3
iHOPCBLN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:04:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.