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CBLN4 (cerebellin 4 precursor)

Identity

Alias_namesCBLNL1
cerebellin precursor-like 1
Alias_symbol (synonym)dJ885A10.1
Other alias
HGNC (Hugo) CBLN4
LocusID (NCBI) 140689
Atlas_Id 61445
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 55997357 and ends at 56005472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAIAP2L1 (7q21.3) / CBLN4 (20q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBLN4   16231
Cards
Entrez_Gene (NCBI)CBLN4  140689  cerebellin 4 precursor
AliasesCBLNL1
GeneCards (Weizmann)CBLN4
Ensembl hg19 (Hinxton)ENSG00000054803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054803 [Gene_View]  chr20:55997357-56005472 [Contig_View]  CBLN4 [Vega]
ICGC DataPortalENSG00000054803
TCGA cBioPortalCBLN4
AceView (NCBI)CBLN4
Genatlas (Paris)CBLN4
WikiGenes140689
SOURCE (Princeton)CBLN4
Genetics Home Reference (NIH)CBLN4
Genomic and cartography
GoldenPath hg38 (UCSC)CBLN4  -     chr20:55997357-56005472 -  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBLN4  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblCBLN4 - 20q13.2 [CytoView hg19]  CBLN4 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBICBLN4 [Mapview hg19]  CBLN4 [Mapview hg38]
OMIM615029   
Gene and transcription
Genbank (Entrez)AK289640 AY358527 BC047076 BC050026 BC069402
RefSeq transcript (Entrez)NM_080617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBLN4
Cluster EST : UnigeneHs.741877 [ NCBI ]
CGAP (NCI)Hs.741877
Alternative Splicing GalleryENSG00000054803
Gene ExpressionCBLN4 [ NCBI-GEO ]   CBLN4 [ EBI - ARRAY_EXPRESS ]   CBLN4 [ SEEK ]   CBLN4 [ MEM ]
Gene Expression Viewer (FireBrowse)CBLN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140689
GTEX Portal (Tissue expression)CBLN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTU7
Splice isoforms : SwissVarQ9NTU7
PhosPhoSitePlusQ9NTU7
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)   
Domain families : Pfam (NCBI)pfam00386   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)CBLN4
DMDM Disease mutations140689
Blocks (Seattle)CBLN4
SuperfamilyQ9NTU7
Human Protein AtlasENSG00000054803
Peptide AtlasQ9NTU7
HPRD16685
IPIIPI00018396   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTU7
IntAct (EBI)Q9NTU7
FunCoupENSG00000054803
BioGRIDCBLN4
STRING (EMBL)CBLN4
ZODIACCBLN4
Ontologies - Pathways
QuickGOQ9NTU7
Ontology : AmiGOextracellular space  protein secretion  cell junction  synapse  
Ontology : EGO-EBIextracellular space  protein secretion  cell junction  synapse  
NDEx NetworkCBLN4
Atlas of Cancer Signalling NetworkCBLN4
Wikipedia pathwaysCBLN4
Orthology - Evolution
OrthoDB140689
GeneTree (enSembl)ENSG00000054803
Phylogenetic Trees/Animal Genes : TreeFamCBLN4
HOVERGENQ9NTU7
HOGENOMQ9NTU7
Homologs : HomoloGeneCBLN4
Homology/Alignments : Family Browser (UCSC)CBLN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBLN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBLN4
dbVarCBLN4
ClinVarCBLN4
1000_GenomesCBLN4 
Exome Variant ServerCBLN4
ExAC (Exome Aggregation Consortium)CBLN4 (select the gene name)
Genetic variants : HAPMAP140689
Genomic Variants (DGV)CBLN4 [DGVbeta]
DECIPHERCBLN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBLN4 
Mutations
ICGC Data PortalCBLN4 
TCGA Data PortalCBLN4 
Broad Tumor PortalCBLN4
OASIS PortalCBLN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBLN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBLN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBLN4
DgiDB (Drug Gene Interaction Database)CBLN4
DoCM (Curated mutations)CBLN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBLN4 (select a term)
intoGenCBLN4
Cancer3DCBLN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615029   
Orphanet
MedgenCBLN4
Genetic Testing Registry CBLN4
NextProtQ9NTU7 [Medical]
TSGene140689
GENETestsCBLN4
Target ValidationCBLN4
Huge Navigator CBLN4 [HugePedia]
snp3D : Map Gene to Disease140689
BioCentury BCIQCBLN4
ClinGenCBLN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140689
Chemical/Pharm GKB GenePA26120
Clinical trialCBLN4
Miscellaneous
canSAR (ICR)CBLN4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBLN4
EVEXCBLN4
GoPubMedCBLN4
iHOPCBLN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:14 CEST 2017

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