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CBR4 (carbonyl reductase 4)

Identity

Alias_symbol (synonym)FLJ14431
SDR45C1
Other alias
HGNC (Hugo) CBR4
LocusID (NCBI) 84869
Atlas_Id 61446
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 168987591 and ends at 169010317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBR4 (4q32.3) / COL11A1 (1p21.1)CBR4 (4q32.3) / GALNTL6 (4q34.1)WTAP (6q25.3) / CBR4 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBR4   25891
Cards
Entrez_Gene (NCBI)CBR4  84869  carbonyl reductase 4
AliasesSDR45C1
GeneCards (Weizmann)CBR4
Ensembl hg19 (Hinxton)ENSG00000145439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145439 [Gene_View]  chr4:168987591-169010317 [Contig_View]  CBR4 [Vega]
ICGC DataPortalENSG00000145439
TCGA cBioPortalCBR4
AceView (NCBI)CBR4
Genatlas (Paris)CBR4
WikiGenes84869
SOURCE (Princeton)CBR4
Genetics Home Reference (NIH)CBR4
Genomic and cartography
GoldenPath hg38 (UCSC)CBR4  -     chr4:168987591-169010317 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBR4  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblCBR4 - 4q32.3 [CytoView hg19]  CBR4 - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBICBR4 [Mapview hg19]  CBR4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027337 AK291756 AL049442 AL833393 AV704400
RefSeq transcript (Entrez)NM_032783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBR4
Cluster EST : UnigeneHs.659311 [ NCBI ]
CGAP (NCI)Hs.659311
Alternative Splicing GalleryENSG00000145439
Gene ExpressionCBR4 [ NCBI-GEO ]   CBR4 [ EBI - ARRAY_EXPRESS ]   CBR4 [ SEEK ]   CBR4 [ MEM ]
Gene Expression Viewer (FireBrowse)CBR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84869
GTEX Portal (Tissue expression)CBR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4T8
Splice isoforms : SwissVarQ8N4T8
PhosPhoSitePlusQ8N4T8
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)NAD(P)-bd_dom    Sc_DH/Rdtase_CS    SDR_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CBR4
DMDM Disease mutations84869
Blocks (Seattle)CBR4
PDB (SRS)4CQL    4CQM   
PDB (PDBSum)4CQL    4CQM   
PDB (IMB)4CQL    4CQM   
PDB (RSDB)4CQL    4CQM   
Structural Biology KnowledgeBase4CQL    4CQM   
SCOP (Structural Classification of Proteins)4CQL    4CQM   
CATH (Classification of proteins structures)4CQL    4CQM   
SuperfamilyQ8N4T8
Human Protein AtlasENSG00000145439
Peptide AtlasQ8N4T8
HPRD07859
IPIIPI00384297   IPI00884980   IPI00909863   IPI00964976   IPI00965277   IPI00967895   IPI00968173   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4T8
IntAct (EBI)Q8N4T8
FunCoupENSG00000145439
BioGRIDCBR4
STRING (EMBL)CBR4
ZODIACCBR4
Ontologies - Pathways
QuickGOQ8N4T8
Ontology : AmiGONAD(P)H dehydrogenase (quinone) activity  protein binding  mitochondrial matrix  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  fatty acid biosynthetic process  NADPH dehydrogenase (quinone) activity  NADPH dehydrogenase (quinone) activity  cellular lipid metabolic process  daunorubicin metabolic process  doxorubicin metabolic process  3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity  quinone binding  quinone binding  protein homotetramerization  protein heterotetramerization  oxidation-reduction process  NADPH binding  NADPH binding  oxidoreductase complex  
Ontology : EGO-EBINAD(P)H dehydrogenase (quinone) activity  protein binding  mitochondrial matrix  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  fatty acid biosynthetic process  NADPH dehydrogenase (quinone) activity  NADPH dehydrogenase (quinone) activity  cellular lipid metabolic process  daunorubicin metabolic process  doxorubicin metabolic process  3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity  quinone binding  quinone binding  protein homotetramerization  protein heterotetramerization  oxidation-reduction process  NADPH binding  NADPH binding  oxidoreductase complex  
NDEx NetworkCBR4
Atlas of Cancer Signalling NetworkCBR4
Wikipedia pathwaysCBR4
Orthology - Evolution
OrthoDB84869
GeneTree (enSembl)ENSG00000145439
Phylogenetic Trees/Animal Genes : TreeFamCBR4
HOVERGENQ8N4T8
HOGENOMQ8N4T8
Homologs : HomoloGeneCBR4
Homology/Alignments : Family Browser (UCSC)CBR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBR4
dbVarCBR4
ClinVarCBR4
1000_GenomesCBR4 
Exome Variant ServerCBR4
ExAC (Exome Aggregation Consortium)CBR4 (select the gene name)
Genetic variants : HAPMAP84869
Genomic Variants (DGV)CBR4 [DGVbeta]
DECIPHERCBR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBR4 
Mutations
ICGC Data PortalCBR4 
TCGA Data PortalCBR4 
Broad Tumor PortalCBR4
OASIS PortalCBR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CBR4
DgiDB (Drug Gene Interaction Database)CBR4
DoCM (Curated mutations)CBR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBR4 (select a term)
intoGenCBR4
Cancer3DCBR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBR4
Genetic Testing Registry CBR4
NextProtQ8N4T8 [Medical]
TSGene84869
GENETestsCBR4
Target ValidationCBR4
Huge Navigator CBR4 [HugePedia]
snp3D : Map Gene to Disease84869
BioCentury BCIQCBR4
ClinGenCBR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84869
Chemical/Pharm GKB GenePA144596471
Clinical trialCBR4
Miscellaneous
canSAR (ICR)CBR4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBR4
EVEXCBR4
GoPubMedCBR4
iHOPCBR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:14 CEST 2017

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