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CBSL (cystathionine-beta-synthase like)

Identity

Other alias-
HGNC (Hugo) CBSL
LocusID (NCBI) 102724560
Atlas_Id 78573
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43053191 and ends at 43076392 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBSL   51829
Cards
Entrez_Gene (NCBI)CBSL  102724560  cystathionine-beta-synthase like
Aliases
GeneCards (Weizmann)CBSL
Ensembl hg19 (Hinxton)ENSG00000274276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274276 [Gene_View]  chr21:43053191-43076392 [Contig_View]  CBSL [Vega]
ICGC DataPortalENSG00000274276
TCGA cBioPortalCBSL
AceView (NCBI)CBSL
Genatlas (Paris)CBSL
WikiGenes102724560
SOURCE (Princeton)CBSL
Genetics Home Reference (NIH)CBSL
Genomic and cartography
GoldenPath hg38 (UCSC)CBSL  -     chr21:43053191-43076392 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBSL  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblCBSL - 21q22.3 [CytoView hg19]  CBSL - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBICBSL [Mapview hg19]  CBSL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007257
RefSeq transcript (Entrez)NM_001321073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBSL
Cluster EST : UnigeneHs.533013 [ NCBI ]
CGAP (NCI)Hs.533013
Alternative Splicing GalleryENSG00000274276
Gene ExpressionCBSL [ NCBI-GEO ]   CBSL [ EBI - ARRAY_EXPRESS ]   CBSL [ SEEK ]   CBSL [ MEM ]
Gene Expression Viewer (FireBrowse)CBSL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724560
GTEX Portal (Tissue expression)CBSL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN79
Splice isoforms : SwissVarP0DN79
PhosPhoSitePlusP0DN79
Domaine pattern : Prosite (Expaxy)CBS (PS51371)    CYS_SYNTHASE (PS00901)   
Domains : Interpro (EBI)CBS_dom    Cysta_beta_synth    P-phosphate_BS    TrpB-like_PLP-dep   
Domain families : Pfam (Sanger)CBS (PF00571)    PALP (PF00291)   
Domain families : Pfam (NCBI)pfam00571    pfam00291   
Domain families : Smart (EMBL)CBS (SM00116)  
Conserved Domain (NCBI)CBSL
DMDM Disease mutations102724560
Blocks (Seattle)CBSL
SuperfamilyP0DN79
Human Protein AtlasENSG00000274276
Peptide AtlasP0DN79
Protein Interaction databases
DIP (DOE-UCLA)P0DN79
IntAct (EBI)P0DN79
FunCoupENSG00000274276
BioGRIDCBSL
STRING (EMBL)CBSL
ZODIACCBSL
Ontologies - Pathways
QuickGOP0DN79
Ontology : AmiGOcystathionine beta-synthase activity  nucleus  cytoplasm  cysteine biosynthetic process from serine  cysteine biosynthetic process via cystathionine  metal ion binding  
Ontology : EGO-EBIcystathionine beta-synthase activity  nucleus  cytoplasm  cysteine biosynthetic process from serine  cysteine biosynthetic process via cystathionine  metal ion binding  
NDEx NetworkCBSL
Atlas of Cancer Signalling NetworkCBSL
Wikipedia pathwaysCBSL
Orthology - Evolution
OrthoDB102724560
GeneTree (enSembl)ENSG00000274276
Phylogenetic Trees/Animal Genes : TreeFamCBSL
HOVERGENP0DN79
HOGENOMP0DN79
Homologs : HomoloGeneCBSL
Homology/Alignments : Family Browser (UCSC)CBSL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBSL
dbVarCBSL
ClinVarCBSL
1000_GenomesCBSL 
Exome Variant ServerCBSL
ExAC (Exome Aggregation Consortium)CBSL (select the gene name)
Genetic variants : HAPMAP102724560
Genomic Variants (DGV)CBSL [DGVbeta]
DECIPHERCBSL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBSL 
Mutations
ICGC Data PortalCBSL 
TCGA Data PortalCBSL 
Broad Tumor PortalCBSL
OASIS PortalCBSL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCBSL
BioMutasearch CBSL
DgiDB (Drug Gene Interaction Database)CBSL
DoCM (Curated mutations)CBSL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBSL (select a term)
intoGenCBSL
Cancer3DCBSL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBSL
Genetic Testing Registry CBSL
NextProtP0DN79 [Medical]
TSGene102724560
GENETestsCBSL
Target ValidationCBSL
Huge Navigator CBSL [HugePedia]
snp3D : Map Gene to Disease102724560
BioCentury BCIQCBSL
ClinGenCBSL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724560
Clinical trialCBSL
Miscellaneous
canSAR (ICR)CBSL (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBSL
EVEXCBSL
GoPubMedCBSL
iHOPCBSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:58 CEST 2017

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