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CBWD1 (COBW domain containing 1)

Identity

Other aliasCOBP
HGNC (Hugo) CBWD1
LocusID (NCBI) 55871
Atlas_Id 61447
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 121038 and ends at 179075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DOCK8 (9p24.3) / CBWD1 (9p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBWD1   17134
Cards
Entrez_Gene (NCBI)CBWD1  55871  COBW domain containing 1
AliasesCOBP
GeneCards (Weizmann)CBWD1
Ensembl hg19 (Hinxton)ENSG00000172785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172785 [Gene_View]  chr9:121038-179075 [Contig_View]  CBWD1 [Vega]
ICGC DataPortalENSG00000172785
TCGA cBioPortalCBWD1
AceView (NCBI)CBWD1
Genatlas (Paris)CBWD1
WikiGenes55871
SOURCE (Princeton)CBWD1
Genetics Home Reference (NIH)CBWD1
Genomic and cartography
GoldenPath hg38 (UCSC)CBWD1  -     chr9:121038-179075 -  9p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBWD1  -     9p24.3   [Description]    (hg19-Feb_2009)
EnsemblCBWD1 - 9p24.3 [CytoView hg19]  CBWD1 - 9p24.3 [CytoView hg38]
Mapping of homologs : NCBICBWD1 [Mapview hg19]  CBWD1 [Mapview hg38]
OMIM611078   
Gene and transcription
Genbank (Entrez)AF212253 AF257330 AK290648 AK297292 AK315855
RefSeq transcript (Entrez)NM_001145355 NM_001145356 NM_018491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBWD1
Cluster EST : UnigeneHs.645337 [ NCBI ]
CGAP (NCI)Hs.645337
Alternative Splicing GalleryENSG00000172785
Gene ExpressionCBWD1 [ NCBI-GEO ]   CBWD1 [ EBI - ARRAY_EXPRESS ]   CBWD1 [ SEEK ]   CBWD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CBWD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55871
GTEX Portal (Tissue expression)CBWD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRT8
Splice isoforms : SwissVarQ9BRT8
PhosPhoSitePlusQ9BRT8
Domains : Interpro (EBI)Cbl_biosynth_CobW-like_C    CobW/HypB/UreG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)cobW (PF02492)    CobW_C (PF07683)   
Domain families : Pfam (NCBI)pfam02492    pfam07683   
Conserved Domain (NCBI)CBWD1
DMDM Disease mutations55871
Blocks (Seattle)CBWD1
SuperfamilyQ9BRT8
Human Protein AtlasENSG00000172785
Peptide AtlasQ9BRT8
HPRD16686
IPIIPI00305163   IPI00748308   IPI00645209   IPI00922130   IPI00930449   IPI00761134   IPI00973034   IPI00607791   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRT8
IntAct (EBI)Q9BRT8
FunCoupENSG00000172785
BioGRIDCBWD1
STRING (EMBL)CBWD1
ZODIACCBWD1
Ontologies - Pathways
QuickGOQ9BRT8
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkCBWD1
Atlas of Cancer Signalling NetworkCBWD1
Wikipedia pathwaysCBWD1
Orthology - Evolution
OrthoDB55871
GeneTree (enSembl)ENSG00000172785
Phylogenetic Trees/Animal Genes : TreeFamCBWD1
HOVERGENQ9BRT8
HOGENOMQ9BRT8
Homologs : HomoloGeneCBWD1
Homology/Alignments : Family Browser (UCSC)CBWD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBWD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBWD1
dbVarCBWD1
ClinVarCBWD1
1000_GenomesCBWD1 
Exome Variant ServerCBWD1
ExAC (Exome Aggregation Consortium)CBWD1 (select the gene name)
Genetic variants : HAPMAP55871
Genomic Variants (DGV)CBWD1 [DGVbeta]
DECIPHERCBWD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBWD1 
Mutations
ICGC Data PortalCBWD1 
TCGA Data PortalCBWD1 
Broad Tumor PortalCBWD1
OASIS PortalCBWD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBWD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBWD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBWD1
DgiDB (Drug Gene Interaction Database)CBWD1
DoCM (Curated mutations)CBWD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBWD1 (select a term)
intoGenCBWD1
Cancer3DCBWD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611078   
Orphanet
MedgenCBWD1
Genetic Testing Registry CBWD1
NextProtQ9BRT8 [Medical]
TSGene55871
GENETestsCBWD1
Target ValidationCBWD1
Huge Navigator CBWD1 [HugePedia]
snp3D : Map Gene to Disease55871
BioCentury BCIQCBWD1
ClinGenCBWD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55871
Chemical/Pharm GKB GenePA26124
Clinical trialCBWD1
Miscellaneous
canSAR (ICR)CBWD1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBWD1
EVEXCBWD1
GoPubMedCBWD1
iHOPCBWD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:58 CEST 2017

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