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CBWD2 (COBW domain containing 2)

Identity

Other alias-
HGNC (Hugo) CBWD2
LocusID (NCBI) 150472
Atlas_Id 61448
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113437691 and ends at 113496204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBWD2 (2q13) / RPL28 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBWD2   17907
Cards
Entrez_Gene (NCBI)CBWD2  150472  COBW domain containing 2
Aliases
GeneCards (Weizmann)CBWD2
Ensembl hg19 (Hinxton)ENSG00000136682 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136682 [Gene_View]  chr2:113437691-113496204 [Contig_View]  CBWD2 [Vega]
ICGC DataPortalENSG00000136682
TCGA cBioPortalCBWD2
AceView (NCBI)CBWD2
Genatlas (Paris)CBWD2
WikiGenes150472
SOURCE (Princeton)CBWD2
Genetics Home Reference (NIH)CBWD2
Genomic and cartography
GoldenPath hg38 (UCSC)CBWD2  -     chr2:113437691-113496204 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBWD2  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblCBWD2 - 2q14.1 [CytoView hg19]  CBWD2 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBICBWD2 [Mapview hg19]  CBWD2 [Mapview hg38]
OMIM611079   
Gene and transcription
Genbank (Entrez)AF452722 AK124867 AK225251 AK290072 AK303653
RefSeq transcript (Entrez)NM_001330336 NM_001330337 NM_001330339 NM_001330340 NM_001330342 NM_172003
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBWD2
Cluster EST : UnigeneHs.531330 [ NCBI ]
CGAP (NCI)Hs.531330
Alternative Splicing GalleryENSG00000136682
Gene ExpressionCBWD2 [ NCBI-GEO ]   CBWD2 [ EBI - ARRAY_EXPRESS ]   CBWD2 [ SEEK ]   CBWD2 [ MEM ]
Gene Expression Viewer (FireBrowse)CBWD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150472
GTEX Portal (Tissue expression)CBWD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUF1
Splice isoforms : SwissVarQ8IUF1
PhosPhoSitePlusQ8IUF1
Domains : Interpro (EBI)Cbl_biosynth_CobW-like_C    CobW/HypB/UreG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)cobW (PF02492)    CobW_C (PF07683)   
Domain families : Pfam (NCBI)pfam02492    pfam07683   
Conserved Domain (NCBI)CBWD2
DMDM Disease mutations150472
Blocks (Seattle)CBWD2
SuperfamilyQ8IUF1
Human Protein AtlasENSG00000136682
Peptide AtlasQ8IUF1
HPRD16687
IPIIPI00216734   IPI00916698   IPI00916179   IPI00916476   IPI00917478   IPI01018222   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUF1
IntAct (EBI)Q8IUF1
FunCoupENSG00000136682
BioGRIDCBWD2
STRING (EMBL)CBWD2
ZODIACCBWD2
Ontologies - Pathways
QuickGOQ8IUF1
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkCBWD2
Atlas of Cancer Signalling NetworkCBWD2
Wikipedia pathwaysCBWD2
Orthology - Evolution
OrthoDB150472
GeneTree (enSembl)ENSG00000136682
Phylogenetic Trees/Animal Genes : TreeFamCBWD2
HOVERGENQ8IUF1
HOGENOMQ8IUF1
Homologs : HomoloGeneCBWD2
Homology/Alignments : Family Browser (UCSC)CBWD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBWD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBWD2
dbVarCBWD2
ClinVarCBWD2
1000_GenomesCBWD2 
Exome Variant ServerCBWD2
ExAC (Exome Aggregation Consortium)CBWD2 (select the gene name)
Genetic variants : HAPMAP150472
Genomic Variants (DGV)CBWD2 [DGVbeta]
DECIPHERCBWD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBWD2 
Mutations
ICGC Data PortalCBWD2 
TCGA Data PortalCBWD2 
Broad Tumor PortalCBWD2
OASIS PortalCBWD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBWD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBWD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBWD2
DgiDB (Drug Gene Interaction Database)CBWD2
DoCM (Curated mutations)CBWD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBWD2 (select a term)
intoGenCBWD2
Cancer3DCBWD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611079   
Orphanet
MedgenCBWD2
Genetic Testing Registry CBWD2
NextProtQ8IUF1 [Medical]
TSGene150472
GENETestsCBWD2
Target ValidationCBWD2
Huge Navigator CBWD2 [HugePedia]
snp3D : Map Gene to Disease150472
BioCentury BCIQCBWD2
ClinGenCBWD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150472
Chemical/Pharm GKB GenePA26125
Clinical trialCBWD2
Miscellaneous
canSAR (ICR)CBWD2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBWD2
EVEXCBWD2
GoPubMedCBWD2
iHOPCBWD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:58 CEST 2017

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