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CBWD3 (COBW domain containing 3)

Identity

Alias_symbol (synonym)bA561O23.1
Other alias
HGNC (Hugo) CBWD3
LocusID (NCBI) 445571
Atlas_Id 61449
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 68241945 and ends at 68300035 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBWD3   18519
Cards
Entrez_Gene (NCBI)CBWD3  445571  COBW domain containing 3
AliasesbA561O23.1
GeneCards (Weizmann)CBWD3
Ensembl hg19 (Hinxton)ENSG00000196873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196873 [Gene_View]  chr9:68241945-68300035 [Contig_View]  CBWD3 [Vega]
ICGC DataPortalENSG00000196873
TCGA cBioPortalCBWD3
AceView (NCBI)CBWD3
Genatlas (Paris)CBWD3
WikiGenes445571
SOURCE (Princeton)CBWD3
Genetics Home Reference (NIH)CBWD3
Genomic and cartography
GoldenPath hg38 (UCSC)CBWD3  -     chr9:68241945-68300035 +  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBWD3  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblCBWD3 - 9q21.11 [CytoView hg19]  CBWD3 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBICBWD3 [Mapview hg19]  CBWD3 [Mapview hg38]
OMIM611080   
Gene and transcription
Genbank (Entrez)AK297912 AY344633 BC172342 BM786305 BU622154
RefSeq transcript (Entrez)NM_001291821 NM_201453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBWD3
Cluster EST : UnigeneHs.645337 [ NCBI ]
CGAP (NCI)Hs.645337
Alternative Splicing GalleryENSG00000196873
Gene ExpressionCBWD3 [ NCBI-GEO ]   CBWD3 [ EBI - ARRAY_EXPRESS ]   CBWD3 [ SEEK ]   CBWD3 [ MEM ]
Gene Expression Viewer (FireBrowse)CBWD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)445571
GTEX Portal (Tissue expression)CBWD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTY5
Splice isoforms : SwissVarQ5JTY5
PhosPhoSitePlusQ5JTY5
Domains : Interpro (EBI)Cbl_biosynth_CobW-like_C    CobW/HypB/UreG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)cobW (PF02492)    CobW_C (PF07683)   
Domain families : Pfam (NCBI)pfam02492    pfam07683   
Domain families : Smart (EMBL)CobW_C (SM00833)  
Conserved Domain (NCBI)CBWD3
DMDM Disease mutations445571
Blocks (Seattle)CBWD3
SuperfamilyQ5JTY5
Human Protein AtlasENSG00000196873
Peptide AtlasQ5JTY5
IPIIPI00945702   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTY5
IntAct (EBI)Q5JTY5
FunCoupENSG00000196873
BioGRIDCBWD3
STRING (EMBL)CBWD3
ZODIACCBWD3
Ontologies - Pathways
QuickGOQ5JTY5
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkCBWD3
Atlas of Cancer Signalling NetworkCBWD3
Wikipedia pathwaysCBWD3
Orthology - Evolution
OrthoDB445571
GeneTree (enSembl)ENSG00000196873
Phylogenetic Trees/Animal Genes : TreeFamCBWD3
HOVERGENQ5JTY5
HOGENOMQ5JTY5
Homologs : HomoloGeneCBWD3
Homology/Alignments : Family Browser (UCSC)CBWD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBWD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBWD3
dbVarCBWD3
ClinVarCBWD3
1000_GenomesCBWD3 
Exome Variant ServerCBWD3
ExAC (Exome Aggregation Consortium)CBWD3 (select the gene name)
Genetic variants : HAPMAP445571
Genomic Variants (DGV)CBWD3 [DGVbeta]
DECIPHERCBWD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBWD3 
Mutations
ICGC Data PortalCBWD3 
TCGA Data PortalCBWD3 
Broad Tumor PortalCBWD3
OASIS PortalCBWD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBWD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBWD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBWD3
DgiDB (Drug Gene Interaction Database)CBWD3
DoCM (Curated mutations)CBWD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBWD3 (select a term)
intoGenCBWD3
Cancer3DCBWD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611080   
Orphanet
MedgenCBWD3
Genetic Testing Registry CBWD3
NextProtQ5JTY5 [Medical]
TSGene445571
GENETestsCBWD3
Target ValidationCBWD3
Huge Navigator CBWD3 [HugePedia]
snp3D : Map Gene to Disease445571
BioCentury BCIQCBWD3
ClinGenCBWD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD445571
Chemical/Pharm GKB GenePA134863724
Clinical trialCBWD3
Miscellaneous
canSAR (ICR)CBWD3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBWD3
EVEXCBWD3
GoPubMedCBWD3
iHOPCBWD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:58 CEST 2017

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