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CBWD5 (COBW domain containing 5)

Identity

Other aliasDC36
HGNC (Hugo) CBWD5
LocusID (NCBI) 220869
Atlas_Id 61450
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 65675834 and ends at 65734041 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBWD5   24584
Cards
Entrez_Gene (NCBI)CBWD5  220869  COBW domain containing 5
AliasesDC36
GeneCards (Weizmann)CBWD5
Ensembl hg19 (Hinxton)ENSG00000147996 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147996 [Gene_View]  chr9:65675834-65734041 [Contig_View]  CBWD5 [Vega]
ICGC DataPortalENSG00000147996
TCGA cBioPortalCBWD5
AceView (NCBI)CBWD5
Genatlas (Paris)CBWD5
WikiGenes220869
SOURCE (Princeton)CBWD5
Genetics Home Reference (NIH)CBWD5
Genomic and cartography
GoldenPath hg38 (UCSC)CBWD5  -     chr9:65675834-65734041 +  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBWD5  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblCBWD5 - 9q21.11 [CytoView hg19]  CBWD5 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBICBWD5 [Mapview hg19]  CBWD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA039734 AA053494 AF065414 AF265442 AK097639
RefSeq transcript (Entrez)NM_001024916 NM_001286835 NM_001286836 NM_001330668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBWD5
Cluster EST : UnigeneHs.645504 [ NCBI ]
CGAP (NCI)Hs.645504
Alternative Splicing GalleryENSG00000147996
Gene ExpressionCBWD5 [ NCBI-GEO ]   CBWD5 [ EBI - ARRAY_EXPRESS ]   CBWD5 [ SEEK ]   CBWD5 [ MEM ]
Gene Expression Viewer (FireBrowse)CBWD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220869
GTEX Portal (Tissue expression)CBWD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5RIA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5RIA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5RIA9
Splice isoforms : SwissVarQ5RIA9
PhosPhoSitePlusQ5RIA9
Domains : Interpro (EBI)Cbl_biosynth_CobW-like_C    CobW/HypB/UreG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)cobW (PF02492)    CobW_C (PF07683)   
Domain families : Pfam (NCBI)pfam02492    pfam07683   
Domain families : Smart (EMBL)CobW_C (SM00833)  
Conserved Domain (NCBI)CBWD5
DMDM Disease mutations220869
Blocks (Seattle)CBWD5
SuperfamilyQ5RIA9
Human Protein AtlasENSG00000147996
Peptide AtlasQ5RIA9
HPRD14134
IPIIPI00647365   IPI01013293   IPI00643534   IPI00645695   
Protein Interaction databases
DIP (DOE-UCLA)Q5RIA9
IntAct (EBI)Q5RIA9
FunCoupENSG00000147996
BioGRIDCBWD5
STRING (EMBL)CBWD5
ZODIACCBWD5
Ontologies - Pathways
QuickGOQ5RIA9
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkCBWD5
Atlas of Cancer Signalling NetworkCBWD5
Wikipedia pathwaysCBWD5
Orthology - Evolution
OrthoDB220869
GeneTree (enSembl)ENSG00000147996
Phylogenetic Trees/Animal Genes : TreeFamCBWD5
HOVERGENQ5RIA9
HOGENOMQ5RIA9
Homologs : HomoloGeneCBWD5
Homology/Alignments : Family Browser (UCSC)CBWD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBWD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBWD5
dbVarCBWD5
ClinVarCBWD5
1000_GenomesCBWD5 
Exome Variant ServerCBWD5
ExAC (Exome Aggregation Consortium)CBWD5 (select the gene name)
Genetic variants : HAPMAP220869
Genomic Variants (DGV)CBWD5 [DGVbeta]
DECIPHERCBWD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBWD5 
Mutations
ICGC Data PortalCBWD5 
TCGA Data PortalCBWD5 
Broad Tumor PortalCBWD5
OASIS PortalCBWD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBWD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBWD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBWD5
DgiDB (Drug Gene Interaction Database)CBWD5
DoCM (Curated mutations)CBWD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBWD5 (select a term)
intoGenCBWD5
Cancer3DCBWD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBWD5
Genetic Testing Registry CBWD5
NextProtQ5RIA9 [Medical]
TSGene220869
GENETestsCBWD5
Target ValidationCBWD5
Huge Navigator CBWD5 [HugePedia]
snp3D : Map Gene to Disease220869
BioCentury BCIQCBWD5
ClinGenCBWD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220869
Chemical/Pharm GKB GenePA142672196
Clinical trialCBWD5
Miscellaneous
canSAR (ICR)CBWD5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBWD5
EVEXCBWD5
GoPubMedCBWD5
iHOPCBWD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:03:58 CEST 2017

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