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CBWD6 (COBW domain containing 6)

Identity

Alias_symbol (synonym)OTTHUMG00000066820
Other aliasCBWD7
HGNC (Hugo) CBWD6
LocusID (NCBI) 644019
Atlas_Id 61451
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 41131309 and ends at 41189364 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBWD6 (9q21.11) / KLF6 (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBWD6   31978
Cards
Entrez_Gene (NCBI)CBWD6  644019  COBW domain containing 6
AliasesCBWD7
GeneCards (Weizmann)CBWD6
Ensembl hg19 (Hinxton)ENSG00000204790 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204790 [Gene_View]  chr9:41131309-41189364 [Contig_View]  CBWD6 [Vega]
ICGC DataPortalENSG00000204790
TCGA cBioPortalCBWD6
AceView (NCBI)CBWD6
Genatlas (Paris)CBWD6
WikiGenes644019
SOURCE (Princeton)CBWD6
Genetics Home Reference (NIH)CBWD6
Genomic and cartography
GoldenPath hg38 (UCSC)CBWD6  -     chr9:41131309-41189364 -  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBWD6  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblCBWD6 - 9p11.2 [CytoView hg19]  CBWD6 - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBICBWD6 [Mapview hg19]  CBWD6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF293368 AK293173 BC069006 CR627025
RefSeq transcript (Entrez)NM_001085457
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBWD6
Cluster EST : UnigeneHs.645337 [ NCBI ]
CGAP (NCI)Hs.645337
Alternative Splicing GalleryENSG00000204790
Gene ExpressionCBWD6 [ NCBI-GEO ]   CBWD6 [ EBI - ARRAY_EXPRESS ]   CBWD6 [ SEEK ]   CBWD6 [ MEM ]
Gene Expression Viewer (FireBrowse)CBWD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644019
GTEX Portal (Tissue expression)CBWD6
Human Protein AtlasENSG00000204790-CBWD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4V339   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4V339  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4V339
Splice isoforms : SwissVarQ4V339
PhosPhoSitePlusQ4V339
Domains : Interpro (EBI)Cbl_biosynth_CobW-like_C    CobW/HypB/UreG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)cobW (PF02492)    CobW_C (PF07683)   
Domain families : Pfam (NCBI)pfam02492    pfam07683   
Domain families : Smart (EMBL)CobW_C (SM00833)  
Conserved Domain (NCBI)CBWD6
DMDM Disease mutations644019
Blocks (Seattle)CBWD6
SuperfamilyQ4V339
Human Protein Atlas [tissue]ENSG00000204790-CBWD6 [tissue]
Peptide AtlasQ4V339
IPIIPI00645737   IPI00930631   IPI00956263   
Protein Interaction databases
DIP (DOE-UCLA)Q4V339
IntAct (EBI)Q4V339
FunCoupENSG00000204790
BioGRIDCBWD6
STRING (EMBL)CBWD6
ZODIACCBWD6
Ontologies - Pathways
QuickGOQ4V339
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkCBWD6
Atlas of Cancer Signalling NetworkCBWD6
Wikipedia pathwaysCBWD6
Orthology - Evolution
OrthoDB644019
GeneTree (enSembl)ENSG00000204790
Phylogenetic Trees/Animal Genes : TreeFamCBWD6
HOVERGENQ4V339
HOGENOMQ4V339
Homologs : HomoloGeneCBWD6
Homology/Alignments : Family Browser (UCSC)CBWD6
Gene fusions - Rearrangements
Tumor Fusion PortalCBWD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBWD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBWD6
dbVarCBWD6
ClinVarCBWD6
1000_GenomesCBWD6 
Exome Variant ServerCBWD6
ExAC (Exome Aggregation Consortium)ENSG00000204790
GNOMAD BrowserENSG00000204790
Genetic variants : HAPMAP644019
Genomic Variants (DGV)CBWD6 [DGVbeta]
DECIPHERCBWD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBWD6 
Mutations
ICGC Data PortalCBWD6 
TCGA Data PortalCBWD6 
Broad Tumor PortalCBWD6
OASIS PortalCBWD6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCBWD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBWD6
DgiDB (Drug Gene Interaction Database)CBWD6
DoCM (Curated mutations)CBWD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBWD6 (select a term)
intoGenCBWD6
Cancer3DCBWD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCBWD6
MedgenCBWD6
Genetic Testing Registry CBWD6
NextProtQ4V339 [Medical]
TSGene644019
GENETestsCBWD6
Target ValidationCBWD6
Huge Navigator CBWD6 [HugePedia]
snp3D : Map Gene to Disease644019
BioCentury BCIQCBWD6
ClinGenCBWD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644019
Chemical/Pharm GKB GenePA145149332
Clinical trialCBWD6
Miscellaneous
canSAR (ICR)CBWD6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBWD6
EVEXCBWD6
GoPubMedCBWD6
iHOPCBWD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:22:50 CET 2017

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