Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CBX6 (chromobox 6)

Identity

Alias_nameschromobox homolog 6
Other alias-
HGNC (Hugo) CBX6
LocusID (NCBI) 23466
Atlas_Id 47138
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39257432 and ends at 39268339 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CBX6 (22q13.1) / CBX6 (22q13.1)CBX6 (22q13.1) / RBFOX1 (16p13.3)NUMBL (19q13.2) / CBX6 (22q13.1)
RPL37A (2q35) / CBX6 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBX6   1556
Cards
Entrez_Gene (NCBI)CBX6  23466  chromobox 6
Aliases
GeneCards (Weizmann)CBX6
Ensembl hg19 (Hinxton)ENSG00000183741 [Gene_View]  chr22:39257432-39268339 [Contig_View]  CBX6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183741 [Gene_View]  chr22:39257432-39268339 [Contig_View]  CBX6 [Vega]
ICGC DataPortalENSG00000183741
TCGA cBioPortalCBX6
AceView (NCBI)CBX6
Genatlas (Paris)CBX6
WikiGenes23466
SOURCE (Princeton)CBX6
Genetics Home Reference (NIH)CBX6
Genomic and cartography
GoldenPath hg19 (UCSC)CBX6  -     chr22:39257432-39268339 -  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CBX6  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblCBX6 - 22q13.1 [CytoView hg19]  CBX6 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBICBX6 [Mapview hg19]  CBX6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094829 AK293035 BC012111 BC064900 CD625491
RefSeq transcript (Entrez)NM_001303494 NM_014292
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)CBX6
Cluster EST : UnigeneHs.592201 [ NCBI ]
CGAP (NCI)Hs.592201
Alternative Splicing GalleryENSG00000183741
Gene ExpressionCBX6 [ NCBI-GEO ]   CBX6 [ EBI - ARRAY_EXPRESS ]   CBX6 [ SEEK ]   CBX6 [ MEM ]
Gene Expression Viewer (FireBrowse)CBX6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23466
GTEX Portal (Tissue expression)CBX6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95503   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95503  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95503
Splice isoforms : SwissVarO95503
PhosPhoSitePlusO95503
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (EBI)Chromo/shadow_dom    Chromo_dom_subgr    Chromo_domain    Chromodomain-like    Chromodomain_CS   
Domain families : Pfam (Sanger)Chromo (PF00385)   
Domain families : Pfam (NCBI)pfam00385   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)CBX6
DMDM Disease mutations23466
Blocks (Seattle)CBX6
PDB (SRS)3GV6    3I90   
PDB (PDBSum)3GV6    3I90   
PDB (IMB)3GV6    3I90   
PDB (RSDB)3GV6    3I90   
Structural Biology KnowledgeBase3GV6    3I90   
SCOP (Structural Classification of Proteins)3GV6    3I90   
CATH (Classification of proteins structures)3GV6    3I90   
SuperfamilyO95503
Human Protein AtlasENSG00000183741
Peptide AtlasO95503
HPRD13005
IPIIPI00784147   IPI00877656   
Protein Interaction databases
DIP (DOE-UCLA)O95503
IntAct (EBI)O95503
FunCoupENSG00000183741
BioGRIDCBX6
STRING (EMBL)CBX6
ZODIACCBX6
Ontologies - Pathways
QuickGOO95503
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  heterochromatin  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  transcription, DNA-templated  chromatin modification  PcG protein complex  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  heterochromatin  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  transcription, DNA-templated  chromatin modification  PcG protein complex  
NDEx NetworkCBX6
Atlas of Cancer Signalling NetworkCBX6
Wikipedia pathwaysCBX6
Orthology - Evolution
OrthoDB23466
GeneTree (enSembl)ENSG00000183741
Phylogenetic Trees/Animal Genes : TreeFamCBX6
HOVERGENO95503
HOGENOMO95503
Homologs : HomoloGeneCBX6
Homology/Alignments : Family Browser (UCSC)CBX6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBX6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBX6
dbVarCBX6
ClinVarCBX6
1000_GenomesCBX6 
Exome Variant ServerCBX6
ExAC (Exome Aggregation Consortium)CBX6 (select the gene name)
Genetic variants : HAPMAP23466
Genomic Variants (DGV)CBX6 [DGVbeta]
DECIPHER (Syndromes)22:39257432-39268339  ENSG00000183741
CONAN: Copy Number AnalysisCBX6 
Mutations
ICGC Data PortalCBX6 
TCGA Data PortalCBX6 
Broad Tumor PortalCBX6
OASIS PortalCBX6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBX6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBX6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBX6
DgiDB (Drug Gene Interaction Database)CBX6
DoCM (Curated mutations)CBX6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBX6 (select a term)
intoGenCBX6
Cancer3DCBX6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBX6
Genetic Testing Registry CBX6
NextProtO95503 [Medical]
TSGene23466
GENETestsCBX6
Huge Navigator CBX6 [HugePedia]
snp3D : Map Gene to Disease23466
BioCentury BCIQCBX6
ClinGenCBX6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23466
Chemical/Pharm GKB GenePA26131
Clinical trialCBX6
Miscellaneous
canSAR (ICR)CBX6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBX6
EVEXCBX6
GoPubMedCBX6
iHOPCBX6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:52 CET 2017

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