Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CBX8 (chromobox homolog 8)

Identity

Other namesPC3
RC1
HGNC (Hugo) CBX8
LocusID (NCBI) 57332
Location 17q25.3
Location_base_pair Starts at 77768176 and ends at 77770915 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CBX8   15962
Entrez_Gene (NCBI)CBX8  57332  chromobox homolog 8
Cards
GeneCards (Weizmann)CBX8
Ensembl (Hinxton) [Gene_View]  chr17:77768176-77770915 [Contig_View]  CBX8 [Vega]
AceView (NCBI)CBX8
Genatlas (Paris)CBX8
SOURCE (Stanford)NM_020649
Genomic and cartography
GoldenPath (UCSC)CBX8  -  17q25.3   chr17:77768176-77770915 -  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCBX8 - 17q25.3 [CytoView]
Mapping of homologs : NCBICBX8 [Mapview]
Gene and transcription
Genbank (Entrez)AF174482 AF266479 AK074560 BC008937 BC009376
RefSeq transcript (SRS)NM_020649
RefSeq transcript (Entrez)NM_020649
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838456 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838456 NW_004078092
Consensus coding sequences : CCDS (NCBI)CBX8
Cluster EST : UnigeneHs.387258 [ SRS ] Hs.387258 [ NCBI ]
CGAP (NCI)Hs.387258
Alternative Splicing : Fast-db (Paris)GSHG0013789
Gene ExpressionCBX8 [ NCBI-GEO ]   CBX8 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC52 (SRS) Q9HC52 (Uniprot)
NextProtQ9HC52
With graphics : InterProQ9HC52
Splice isoforms : SwissVarQ9HC52(Swissvar)
Domaine pattern : Prosite (SRS)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domaine pattern : Prosite (Expaxy)CHROMO_1 (PS00598)    CHROMO_2 (PS50013)   
Domains : Interpro (SRS)Chromo_domain    Chromo_domain/shadow    Chromodomain-like    Chromodomain_CS   
Domains : Interpro (EBI)Chromo_domain    Chromo_domain/shadow    Chromodomain-like    Chromodomain_CS   
Related proteins : CluSTrQ9HC52
Domain families : Pfam (SRS)Chromo (PF00385)   
Domain families : Pfam (Sanger)Chromo (PF00385)   
Domain families : Pfam (NCBI)pfam00385   
Domain families : Smart (EMBL)CHROMO (SM00298)  
DMDM57332
Blocks (Seattle)Q9HC52
PDB (SRS)3I91   
PDB (PDBSum)3I91   
PDB (IMB)3I91   
PDB (RSDB)3I91   
HPRD13006
IPIIPI00307659   IPI00878493   IPI00878943   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC52
IntAct (EBI)Q9HC52
REACTOMECBX8
Protein Interaction Database57332
BioGRIDCBX8
InParanoidQ9HC52
Interologous Interaction database Q9HC52
IntegromeDBCBX8
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CBX8
SNP (GeneSNP Utah)CBX8
SNP : HGBaseCBX8
Genetic variants : HAPMAPCBX8
Somatic Mutations in Cancer : COSMICCBX8 
CONAN: Copy Number AnalysisCBX8 
Mutations and Diseases : HGMDCBX8
OMIM
GENETests
Disease Genetic AssociationCBX8
Huge Navigator CBX8 [HugePedia]  CBX8 [HugeCancerGEM]
Genomic VariantsCBX8  CBX8 [DGVbeta]
ClinVarCBX8
snp3D : Map Gene to Disease57332
General knowledge
Homologs : HomoloGeneCBX8
Homology/Alignments : Family Browser (UCSC)CBX8
Phylogenetic Trees/Animal Genes : TreeFamCBX8
Chemical/Protein Interactions : CTD57332
Chemical/Pharm GKB GenePA26133
Clinical trialCBX8
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  ubiquitin ligase complex  nuclear chromatin  heterochromatin  single-stranded RNA binding  ubiquitin-protein ligase activity  protein binding  nucleus  nucleolus  transcription, DNA-dependent  histone ubiquitination  PcG protein complex  methylated histone residue binding  PRC1 complex  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  ubiquitin ligase complex  nuclear chromatin  heterochromatin  single-stranded RNA binding  ubiquitin-protein ligase activity  protein binding  nucleus  nucleolus  transcription, DNA-dependent  histone ubiquitination  PcG protein complex  methylated histone residue binding  PRC1 complex  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneCBX8
iHOPCBX8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:43:41 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.