Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CBY3 (chibby family member 3)

Identity

Alias_nameschibby homolog 3 (Drosophila)
Other alias-
HGNC (Hugo) CBY3
LocusID (NCBI) 646019
Atlas_Id 61454
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179678558 and ends at 179680974 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CBY3   33278
Cards
Entrez_Gene (NCBI)CBY3  646019  chibby family member 3
Aliases
GeneCards (Weizmann)CBY3
Ensembl hg19 (Hinxton)ENSG00000204659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204659 [Gene_View]  chr5:179678558-179680974 [Contig_View]  CBY3 [Vega]
ICGC DataPortalENSG00000204659
TCGA cBioPortalCBY3
AceView (NCBI)CBY3
Genatlas (Paris)CBY3
WikiGenes646019
SOURCE (Princeton)CBY3
Genetics Home Reference (NIH)CBY3
Genomic and cartography
GoldenPath hg38 (UCSC)CBY3  -     chr5:179678558-179680974 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CBY3  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblCBY3 - 5q35.3 [CytoView hg19]  CBY3 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBICBY3 [Mapview hg19]  CBY3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX110582
RefSeq transcript (Entrez)NM_001164444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CBY3
Cluster EST : UnigeneHs.535767 [ NCBI ]
CGAP (NCI)Hs.535767
Alternative Splicing GalleryENSG00000204659
Gene ExpressionCBY3 [ NCBI-GEO ]   CBY3 [ EBI - ARRAY_EXPRESS ]   CBY3 [ SEEK ]   CBY3 [ MEM ]
Gene Expression Viewer (FireBrowse)CBY3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646019
GTEX Portal (Tissue expression)CBY3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI87
Splice isoforms : SwissVarA6NI87
PhosPhoSitePlusA6NI87
Domains : Interpro (EBI)Chibby_fam   
Domain families : Pfam (Sanger)Chibby (PF14645)   
Domain families : Pfam (NCBI)pfam14645   
Conserved Domain (NCBI)CBY3
DMDM Disease mutations646019
Blocks (Seattle)CBY3
SuperfamilyA6NI87
Human Protein AtlasENSG00000204659
Peptide AtlasA6NI87
IPIIPI00740400   
Protein Interaction databases
DIP (DOE-UCLA)A6NI87
IntAct (EBI)A6NI87
FunCoupENSG00000204659
BioGRIDCBY3
STRING (EMBL)CBY3
ZODIACCBY3
Ontologies - Pathways
QuickGOA6NI87
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCBY3
Atlas of Cancer Signalling NetworkCBY3
Wikipedia pathwaysCBY3
Orthology - Evolution
OrthoDB646019
GeneTree (enSembl)ENSG00000204659
Phylogenetic Trees/Animal Genes : TreeFamCBY3
HOVERGENA6NI87
HOGENOMA6NI87
Homologs : HomoloGeneCBY3
Homology/Alignments : Family Browser (UCSC)CBY3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCBY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CBY3
dbVarCBY3
ClinVarCBY3
1000_GenomesCBY3 
Exome Variant ServerCBY3
ExAC (Exome Aggregation Consortium)CBY3 (select the gene name)
Genetic variants : HAPMAP646019
Genomic Variants (DGV)CBY3 [DGVbeta]
DECIPHERCBY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCBY3 
Mutations
ICGC Data PortalCBY3 
TCGA Data PortalCBY3 
Broad Tumor PortalCBY3
OASIS PortalCBY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCBY3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCBY3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CBY3
DgiDB (Drug Gene Interaction Database)CBY3
DoCM (Curated mutations)CBY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CBY3 (select a term)
intoGenCBY3
Cancer3DCBY3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCBY3
Genetic Testing Registry CBY3
NextProtA6NI87 [Medical]
TSGene646019
GENETestsCBY3
Target ValidationCBY3
Huge Navigator CBY3 [HugePedia]
snp3D : Map Gene to Disease646019
BioCentury BCIQCBY3
ClinGenCBY3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646019
Chemical/Pharm GKB GenePA162381185
Clinical trialCBY3
Miscellaneous
canSAR (ICR)CBY3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCBY3
EVEXCBY3
GoPubMedCBY3
iHOPCBY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:16 CEST 2017

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