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CCAT1 (colon cancer associated transcript 1 (non-protein coding))

Identity

Alias_symbol (synonym)CARLo-5
onco-lncRNA-40
Other alias
HGNC (Hugo) CCAT1
LocusID (NCBI) 100507056
Atlas_Id 53201
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127207382 and ends at 127219268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCAT1   45128
Cards
Entrez_Gene (NCBI)CCAT1  100507056  colon cancer associated transcript 1 (non-protein coding)
AliasesCARLo-5; onco-lncRNA-40
GeneCards (Weizmann)CCAT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:127207382-127219268 [Contig_View]  CCAT1 [Vega]
TCGA cBioPortalCCAT1
AceView (NCBI)CCAT1
Genatlas (Paris)CCAT1
WikiGenes100507056
SOURCE (Princeton)CCAT1
Genetics Home Reference (NIH)CCAT1
Genomic and cartography
GoldenPath hg38 (UCSC)CCAT1  -     chr8:127207382-127219268 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCAT1  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblCCAT1 - 8q24.21 [CytoView hg19]  CCAT1 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICCAT1 [Mapview hg19]  CCAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125310 HM358356 HY180930 HY370674 JX003870
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCAT1
Cluster EST : UnigeneHs.343864 [ NCBI ]
CGAP (NCI)Hs.343864
Gene ExpressionCCAT1 [ NCBI-GEO ]   CCAT1 [ EBI - ARRAY_EXPRESS ]   CCAT1 [ SEEK ]   CCAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507056
GTEX Portal (Tissue expression)CCAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCAT1
DMDM Disease mutations100507056
Blocks (Seattle)CCAT1
Protein Interaction databases
BioGRIDCCAT1
STRING (EMBL)CCAT1
ZODIACCCAT1
Ontologies - Pathways
Huge Navigator CCAT1 [HugePedia]
snp3D : Map Gene to Disease100507056
BioCentury BCIQCCAT1
ClinGenCCAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507056
Clinical trialCCAT1
Miscellaneous
canSAR (ICR)CCAT1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCAT1
EVEXCCAT1
GoPubMedCCAT1
iHOPCCAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:11 CET 2017

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