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CCAT2 (colon cancer associated transcript 2)

Identity

Alias (NCBI)LINC00873
NCCP1
HGNC (Hugo) CCAT2
HGNC Alias symbNCCP1
LINC00873
HGNC Alias namelong intergenic non-protein coding RNA 873
 non-coding RNA involved in cancer predisposition 1
HGNC Previous namecolon cancer associated transcript 2 (non-protein coding)
LocusID (NCBI) 101805488
Atlas_Id 53434
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127400399 and ends at 127402150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CCAT2   47044
Cards
Entrez_Gene (NCBI)CCAT2    colon cancer associated transcript 2
AliasesLINC00873; NCCP1
GeneCards (Weizmann)CCAT2
Ensembl hg19 (Hinxton)ENSG00000280997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280997 [Gene_View]  ENSG00000280997 [Sequence]  chr8:127400399-127402150 [Contig_View]  CCAT2 [Vega]
ICGC DataPortalENSG00000280997
TCGA cBioPortalCCAT2
AceView (NCBI)CCAT2
Genatlas (Paris)CCAT2
SOURCE (Princeton)CCAT2
Genetics Home Reference (NIH)CCAT2
Genomic and cartography
GoldenPath hg38 (UCSC)CCAT2  -     chr8:127400399-127402150 +  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCAT2  -     8q24.21   [Description]    (hg19-Feb_2009)
GoldenPathCCAT2 - 8q24.21 [CytoView hg19]  CCAT2 - 8q24.21 [CytoView hg38]
ImmunoBaseENSG00000280997
genome Data Viewer NCBICCAT2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)GQ911591 GQ911592
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCAT2
Alternative Splicing GalleryENSG00000280997
Gene ExpressionCCAT2 [ NCBI-GEO ]   CCAT2 [ EBI - ARRAY_EXPRESS ]   CCAT2 [ SEEK ]   CCAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCAT2 [ Firebrowse - Broad ]
GenevisibleExpression of CCAT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101805488
GTEX Portal (Tissue expression)CCAT2
Human Protein AtlasENSG00000280997-CCAT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCAT2
Blocks (Seattle)CCAT2
Human Protein Atlas [tissue]ENSG00000280997-CCAT2 [tissue]
Protein Interaction databases
BioGRIDCCAT2
STRING (EMBL)CCAT2
ZODIACCCAT2
Ontologies - Pathways
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:14:03 CET 2021

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