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CCAT2 (colon cancer associated transcript 2 (non-protein coding))

Identity

Alias_symbol (synonym)NCCP1
LINC00873
Other alias
HGNC (Hugo) CCAT2
LocusID (NCBI) 101805488
Atlas_Id 53434
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127400399 and ends at 127402150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCAT2   47044
Cards
Entrez_Gene (NCBI)CCAT2  101805488  colon cancer associated transcript 2 (non-protein coding)
AliasesLINC00873; NCCP1
GeneCards (Weizmann)CCAT2
Ensembl hg19 (Hinxton)ENSG00000280997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280997 [Gene_View]  chr8:127400399-127402150 [Contig_View]  CCAT2 [Vega]
ICGC DataPortalENSG00000280997
TCGA cBioPortalCCAT2
AceView (NCBI)CCAT2
Genatlas (Paris)CCAT2
WikiGenes101805488
SOURCE (Princeton)CCAT2
Genetics Home Reference (NIH)CCAT2
Genomic and cartography
GoldenPath hg38 (UCSC)CCAT2  -     chr8:127400399-127402150 +  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCAT2  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblCCAT2 - 8q24.21 [CytoView hg19]  CCAT2 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBICCAT2 [Mapview hg19]  CCAT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)GQ911591 GQ911592
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCAT2
Cluster EST : UnigeneHs.745578 [ NCBI ]
CGAP (NCI)Hs.745578
Alternative Splicing GalleryENSG00000280997
Gene ExpressionCCAT2 [ NCBI-GEO ]   CCAT2 [ EBI - ARRAY_EXPRESS ]   CCAT2 [ SEEK ]   CCAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101805488
GTEX Portal (Tissue expression)CCAT2
Human Protein AtlasENSG00000280997-CCAT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCAT2
DMDM Disease mutations101805488
Blocks (Seattle)CCAT2
Human Protein Atlas [tissue]ENSG00000280997-CCAT2 [tissue]
Protein Interaction databases
FunCoupENSG00000280997
BioGRIDCCAT2
STRING (EMBL)CCAT2
ZODIACCCAT2
Ontologies - Pathways
Huge Navigator CCAT2 [HugePedia]
snp3D : Map Gene to Disease101805488
BioCentury BCIQCCAT2
ClinGenCCAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101805488
Clinical trialCCAT2
Miscellaneous
canSAR (ICR)CCAT2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCAT2
EVEXCCAT2
GoPubMedCCAT2
iHOPCCAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:11 CET 2017

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