Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CCBP2 (chemokine binding protein 2)

Identity

Other namesCCR10
CCR9
CMKBR9
D6
hD6
HGNC (Hugo) CCBP2
LocusID (NCBI) 1238
Location 3p22.1
Location_base_pair Starts at 42850964 and ends at 42908775 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CCBP2   1565
Entrez_Gene (NCBI)CCBP2  1238  chemokine binding protein 2
Cards
GeneCards (Weizmann)CCBP2
Ensembl (Hinxton)ENSG00000144648 [Gene_View]  chr3:42850964-42908775 [Contig_View]  CCBP2 [Vega]
AceView (NCBI)CCBP2
Genatlas (Paris)CCBP2
SOURCE (Stanford)NM_001296
Genomic and cartography
GoldenPath (UCSC)CCBP2  -  3p22.1   chr3:42850964-42908775 +  3p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCBP2 - 3p22.1 [CytoView]
Mapping of homologs : NCBICCBP2 [Mapview]
OMIM602648   
Gene and transcription
Genbank (Entrez)AK313561 BC008816 BC011588 BC011631 BC018716
RefSeq transcript (SRS)NM_001296
RefSeq transcript (Entrez)NM_001296
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)CCBP2
Cluster EST : UnigeneHs.146346 [ SRS ] Hs.146346 [ NCBI ]
CGAP (NCI)Hs.146346
Alternative Splicing : Fast-db (Paris)GSHG0020736
Alternative Splicing GalleryENSG00000144648
Gene ExpressionCCBP2 [ NCBI-GEO ]   CCBP2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00590 (SRS) O00590 (Uniprot)
NextProtO00590
With graphics : InterProO00590
Splice isoforms : SwissVarO00590(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)7TM_GPCR_Rhodpsn    Chemokine_CXCR4    Chemokine_rcpt    GPCR_Rhodpsn_supfam   
Domains : Interpro (EBI)7TM_GPCR_Rhodpsn    Chemokine_CXCR4    Chemokine_rcpt    GPCR_Rhodpsn_supfam   
Related proteins : CluSTrO00590
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM1238
Blocks (Seattle)O00590
Human Protein AtlasENSG00000144648
HPRD09095
IPIIPI00012180   
Protein Interaction databases
DIP (DOE-UCLA)O00590
IntAct (EBI)O00590
FunCoupENSG00000144648
REACTOMECCBP2
Protein Interaction Database1238
BioGRIDCCBP2
InParanoidO00590
Interologous Interaction database O00590
IntegromeDBCCBP2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CCBP2
SNP (GeneSNP Utah)CCBP2
SNP : HGBaseCCBP2
Genetic variants : HAPMAPCCBP2
Somatic Mutations in Cancer : COSMICCCBP2 
CONAN: Copy Number AnalysisCCBP2 
Mutations and Diseases : HGMDCCBP2
OMIM602648   
GENETests602648   
Disease Genetic AssociationCCBP2
Huge Navigator CCBP2 [HugePedia]  CCBP2 [HugeCancerGEM]
Genomic VariantsCCBP2  CCBP2 [DGVbeta]
snp3D : Map Gene to Disease1238
General knowledge
Homologs : HomoloGeneCCBP2
Homology/Alignments : Family Browser (UCSC)CCBP2
Phylogenetic Trees/Animal Genes : TreeFamCCBP2
Chemical/Protein Interactions : CTD1238
Chemical/Pharm GKB GenePA26139
Clinical trialCCBP2
Cancer Resource (Charite)ENSG00000144648
Ontology : AmiGOchemokine receptor activity  plasma membrane  integral to plasma membrane  chemotaxis  immune response  G-protein coupled receptor signaling pathway  multicellular organismal development  C-C chemokine receptor activity  C-X-C chemokine receptor activity  C-C chemokine binding  chemokine-mediated signaling pathway  
Ontology : EGO-EBIchemokine receptor activity  plasma membrane  integral to plasma membrane  chemotaxis  immune response  G-protein coupled receptor signaling pathway  multicellular organismal development  C-C chemokine receptor activity  C-X-C chemokine receptor activity  C-C chemokine binding  chemokine-mediated signaling pathway  
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
PubGeneCCBP2
iHOPCCBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:22 CEST 2013
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