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CCDC101 (coiled-coil domain containing 101)

Identity

Other aliasSGF29
STAF36
HGNC (Hugo) CCDC101
LocusID (NCBI) 112869
Atlas_Id 61459
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28565249 and ends at 28603111 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC101   25156
Cards
Entrez_Gene (NCBI)CCDC101  112869  coiled-coil domain containing 101
AliasesSGF29; STAF36
GeneCards (Weizmann)CCDC101
Ensembl hg19 (Hinxton)ENSG00000176476 [Gene_View]  chr16:28565249-28603111 [Contig_View]  CCDC101 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176476 [Gene_View]  chr16:28565249-28603111 [Contig_View]  CCDC101 [Vega]
ICGC DataPortalENSG00000176476
TCGA cBioPortalCCDC101
AceView (NCBI)CCDC101
Genatlas (Paris)CCDC101
WikiGenes112869
SOURCE (Princeton)CCDC101
Genetics Home Reference (NIH)CCDC101
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC101  -     chr16:28565249-28603111 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC101  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblCCDC101 - 16p11.2 [CytoView hg19]  CCDC101 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC101 [Mapview hg19]  CCDC101 [Mapview hg38]
OMIM613374   
Gene and transcription
Genbank (Entrez)AA132314 AA132818 AK057008 BC011981
RefSeq transcript (Entrez)NM_138414
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)CCDC101
Cluster EST : UnigeneHs.655476 [ NCBI ]
CGAP (NCI)Hs.655476
Alternative Splicing GalleryENSG00000176476
Gene ExpressionCCDC101 [ NCBI-GEO ]   CCDC101 [ EBI - ARRAY_EXPRESS ]   CCDC101 [ SEEK ]   CCDC101 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC101 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112869
GTEX Portal (Tissue expression)CCDC101
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ES7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ES7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ES7
Splice isoforms : SwissVarQ96ES7
PhosPhoSitePlusQ96ES7
Domaine pattern : Prosite (Expaxy)SGF29_C (PS51518)   
Domains : Interpro (EBI)SGF29_tudor-like_dom   
Domain families : Pfam (Sanger)DUF1325 (PF07039)   
Domain families : Pfam (NCBI)pfam07039   
Conserved Domain (NCBI)CCDC101
DMDM Disease mutations112869
Blocks (Seattle)CCDC101
PDB (SRS)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
PDB (PDBSum)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
PDB (IMB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
PDB (RSDB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
Structural Biology KnowledgeBase3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
SCOP (Structural Classification of Proteins)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
CATH (Classification of proteins structures)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW   
SuperfamilyQ96ES7
Human Protein AtlasENSG00000176476
Peptide AtlasQ96ES7
HPRD13996
IPIIPI00061680   
Protein Interaction databases
DIP (DOE-UCLA)Q96ES7
IntAct (EBI)Q96ES7
FunCoupENSG00000176476
BioGRIDCCDC101
STRING (EMBL)CCDC101
ZODIACCCDC101
Ontologies - Pathways
QuickGOQ96ES7
Ontology : AmiGOprotein binding  Ada2/Gcn5/Ada3 transcription activator complex  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  methylated histone binding  histone H3 acetylation  SAGA-type complex  establishment of protein localization to chromatin  
Ontology : EGO-EBIprotein binding  Ada2/Gcn5/Ada3 transcription activator complex  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  methylated histone binding  histone H3 acetylation  SAGA-type complex  establishment of protein localization to chromatin  
NDEx NetworkCCDC101
Atlas of Cancer Signalling NetworkCCDC101
Wikipedia pathwaysCCDC101
Orthology - Evolution
OrthoDB112869
GeneTree (enSembl)ENSG00000176476
Phylogenetic Trees/Animal Genes : TreeFamCCDC101
HOVERGENQ96ES7
HOGENOMQ96ES7
Homologs : HomoloGeneCCDC101
Homology/Alignments : Family Browser (UCSC)CCDC101
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC101 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC101
dbVarCCDC101
ClinVarCCDC101
1000_GenomesCCDC101 
Exome Variant ServerCCDC101
ExAC (Exome Aggregation Consortium)CCDC101 (select the gene name)
Genetic variants : HAPMAP112869
Genomic Variants (DGV)CCDC101 [DGVbeta]
DECIPHER (Syndromes)16:28565249-28603111  ENSG00000176476
CONAN: Copy Number AnalysisCCDC101 
Mutations
ICGC Data PortalCCDC101 
TCGA Data PortalCCDC101 
Broad Tumor PortalCCDC101
OASIS PortalCCDC101 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC101  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC101
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC101
DgiDB (Drug Gene Interaction Database)CCDC101
DoCM (Curated mutations)CCDC101 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC101 (select a term)
intoGenCCDC101
Cancer3DCCDC101(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613374   
Orphanet
MedgenCCDC101
Genetic Testing Registry CCDC101
NextProtQ96ES7 [Medical]
TSGene112869
GENETestsCCDC101
Huge Navigator CCDC101 [HugePedia]
snp3D : Map Gene to Disease112869
BioCentury BCIQCCDC101
ClinGenCCDC101
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112869
Chemical/Pharm GKB GenePA144596468
Clinical trialCCDC101
Miscellaneous
canSAR (ICR)CCDC101 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC101
EVEXCCDC101
GoPubMedCCDC101
iHOPCCDC101
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:17 CET 2017

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