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CCDC102A (coiled-coil domain containing 102A)

Identity

Alias_symbol (synonym)MGC10992
Other alias-
HGNC (Hugo) CCDC102A
LocusID (NCBI) 92922
Atlas_Id 61460
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 57512178 and ends at 57536565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC102A (16q21) / CCDC102A (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC102A   28097
Cards
Entrez_Gene (NCBI)CCDC102A  92922  coiled-coil domain containing 102A
Aliases
GeneCards (Weizmann)CCDC102A
Ensembl hg19 (Hinxton)ENSG00000135736 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135736 [Gene_View]  chr16:57512178-57536565 [Contig_View]  CCDC102A [Vega]
ICGC DataPortalENSG00000135736
TCGA cBioPortalCCDC102A
AceView (NCBI)CCDC102A
Genatlas (Paris)CCDC102A
WikiGenes92922
SOURCE (Princeton)CCDC102A
Genetics Home Reference (NIH)CCDC102A
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC102A  -     chr16:57512178-57536565 -  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC102A  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblCCDC102A - 16q21 [CytoView hg19]  CCDC102A - 16q21 [CytoView hg38]
Mapping of homologs : NCBICCDC102A [Mapview hg19]  CCDC102A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC004307 BC008285 BC009941 CA449463 DQ892649
RefSeq transcript (Entrez)NM_033212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC102A
Cluster EST : UnigeneHs.644611 [ NCBI ]
CGAP (NCI)Hs.644611
Alternative Splicing GalleryENSG00000135736
Gene ExpressionCCDC102A [ NCBI-GEO ]   CCDC102A [ EBI - ARRAY_EXPRESS ]   CCDC102A [ SEEK ]   CCDC102A [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC102A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92922
GTEX Portal (Tissue expression)CCDC102A
Human Protein AtlasENSG00000135736-CCDC102A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A19
Splice isoforms : SwissVarQ96A19
PhosPhoSitePlusQ96A19
Domains : Interpro (EBI)Myosin_tail   
Domain families : Pfam (Sanger)Myosin_tail_1 (PF01576)   
Domain families : Pfam (NCBI)pfam01576   
Conserved Domain (NCBI)CCDC102A
DMDM Disease mutations92922
Blocks (Seattle)CCDC102A
SuperfamilyQ96A19
Human Protein Atlas [tissue]ENSG00000135736-CCDC102A [tissue]
Peptide AtlasQ96A19
HPRD14408
IPIIPI00059169   
Protein Interaction databases
DIP (DOE-UCLA)Q96A19
IntAct (EBI)Q96A19
FunCoupENSG00000135736
BioGRIDCCDC102A
STRING (EMBL)CCDC102A
ZODIACCCDC102A
Ontologies - Pathways
QuickGOQ96A19
Ontology : AmiGOmotor activity  myosin complex  
Ontology : EGO-EBImotor activity  myosin complex  
NDEx NetworkCCDC102A
Atlas of Cancer Signalling NetworkCCDC102A
Wikipedia pathwaysCCDC102A
Orthology - Evolution
OrthoDB92922
GeneTree (enSembl)ENSG00000135736
Phylogenetic Trees/Animal Genes : TreeFamCCDC102A
HOVERGENQ96A19
HOGENOMQ96A19
Homologs : HomoloGeneCCDC102A
Homology/Alignments : Family Browser (UCSC)CCDC102A
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC102A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC102A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC102A
dbVarCCDC102A
ClinVarCCDC102A
1000_GenomesCCDC102A 
Exome Variant ServerCCDC102A
ExAC (Exome Aggregation Consortium)ENSG00000135736
GNOMAD BrowserENSG00000135736
Genetic variants : HAPMAP92922
Genomic Variants (DGV)CCDC102A [DGVbeta]
DECIPHERCCDC102A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC102A 
Mutations
ICGC Data PortalCCDC102A 
TCGA Data PortalCCDC102A 
Broad Tumor PortalCCDC102A
OASIS PortalCCDC102A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC102A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC102A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC102A
DgiDB (Drug Gene Interaction Database)CCDC102A
DoCM (Curated mutations)CCDC102A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC102A (select a term)
intoGenCCDC102A
Cancer3DCCDC102A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC102A
MedgenCCDC102A
Genetic Testing Registry CCDC102A
NextProtQ96A19 [Medical]
TSGene92922
GENETestsCCDC102A
Target ValidationCCDC102A
Huge Navigator CCDC102A [HugePedia]
snp3D : Map Gene to Disease92922
BioCentury BCIQCCDC102A
ClinGenCCDC102A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92922
Chemical/Pharm GKB GenePA144596469
Clinical trialCCDC102A
Miscellaneous
canSAR (ICR)CCDC102A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC102A
EVEXCCDC102A
GoPubMedCCDC102A
iHOPCCDC102A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:32:59 CET 2017

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