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CCDC102B (coiled-coil domain containing 102B)

Identity

Alias_namesC18orf14
ACY1L
chromosome 18 open reading frame 14
aminoacylase 1-like
Alias_symbol (synonym)FLJ23594
HsT1731
AN
Other alias
HGNC (Hugo) CCDC102B
LocusID (NCBI) 79839
Atlas_Id 61461
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 68715254 and ends at 69055189 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL5B (10p12.31) / CCDC102B (18q22.1)DOK6 (18q22.2) / CCDC102B (18q22.1)DTX4 (11q12.1) / CCDC102B (18q22.1)
DTX4 CCDC102BARL5B CCDC102B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC102B   26295
Cards
Entrez_Gene (NCBI)CCDC102B  79839  coiled-coil domain containing 102B
AliasesACY1L; AN; C18orf14; HsT1731
GeneCards (Weizmann)CCDC102B
Ensembl hg19 (Hinxton)ENSG00000150636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150636 [Gene_View]  chr18:68715254-69055189 [Contig_View]  CCDC102B [Vega]
ICGC DataPortalENSG00000150636
TCGA cBioPortalCCDC102B
AceView (NCBI)CCDC102B
Genatlas (Paris)CCDC102B
WikiGenes79839
SOURCE (Princeton)CCDC102B
Genetics Home Reference (NIH)CCDC102B
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC102B  -     chr18:68715254-69055189 +  18q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC102B  -     18q22.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC102B - 18q22.1 [CytoView hg19]  CCDC102B - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBICCDC102B [Mapview hg19]  CCDC102B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026731 AK027247 AK057282 AK091108 AK225597
RefSeq transcript (Entrez)NM_001093729 NM_024781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC102B
Cluster EST : UnigeneHs.540997 [ NCBI ]
CGAP (NCI)Hs.540997
Alternative Splicing GalleryENSG00000150636
Gene ExpressionCCDC102B [ NCBI-GEO ]   CCDC102B [ EBI - ARRAY_EXPRESS ]   CCDC102B [ SEEK ]   CCDC102B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC102B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79839
GTEX Portal (Tissue expression)CCDC102B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D86
Splice isoforms : SwissVarQ68D86
PhosPhoSitePlusQ68D86
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC102B
DMDM Disease mutations79839
Blocks (Seattle)CCDC102B
SuperfamilyQ68D86
Human Protein AtlasENSG00000150636
Peptide AtlasQ68D86
HPRD08038
IPIIPI00015595   IPI00744298   IPI00385048   IPI01018797   
Protein Interaction databases
DIP (DOE-UCLA)Q68D86
IntAct (EBI)Q68D86
FunCoupENSG00000150636
BioGRIDCCDC102B
STRING (EMBL)CCDC102B
ZODIACCCDC102B
Ontologies - Pathways
QuickGOQ68D86
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC102B
Atlas of Cancer Signalling NetworkCCDC102B
Wikipedia pathwaysCCDC102B
Orthology - Evolution
OrthoDB79839
GeneTree (enSembl)ENSG00000150636
Phylogenetic Trees/Animal Genes : TreeFamCCDC102B
HOVERGENQ68D86
HOGENOMQ68D86
Homologs : HomoloGeneCCDC102B
Homology/Alignments : Family Browser (UCSC)CCDC102B
Gene fusions - Rearrangements
Fusion: TCGADTX4 CCDC102B
Fusion: TCGAARL5B CCDC102B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC102B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC102B
dbVarCCDC102B
ClinVarCCDC102B
1000_GenomesCCDC102B 
Exome Variant ServerCCDC102B
ExAC (Exome Aggregation Consortium)CCDC102B (select the gene name)
Genetic variants : HAPMAP79839
Genomic Variants (DGV)CCDC102B [DGVbeta]
DECIPHERCCDC102B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC102B 
Mutations
ICGC Data PortalCCDC102B 
TCGA Data PortalCCDC102B 
Broad Tumor PortalCCDC102B
OASIS PortalCCDC102B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC102B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC102B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC102B
DgiDB (Drug Gene Interaction Database)CCDC102B
DoCM (Curated mutations)CCDC102B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC102B (select a term)
intoGenCCDC102B
Cancer3DCCDC102B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC102B
Genetic Testing Registry CCDC102B
NextProtQ68D86 [Medical]
TSGene79839
GENETestsCCDC102B
Target ValidationCCDC102B
Huge Navigator CCDC102B [HugePedia]
snp3D : Map Gene to Disease79839
BioCentury BCIQCCDC102B
ClinGenCCDC102B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79839
Chemical/Pharm GKB GenePA134948675
Clinical trialCCDC102B
Miscellaneous
canSAR (ICR)CCDC102B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC102B
EVEXCCDC102B
GoPubMedCCDC102B
iHOPCCDC102B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:18 CEST 2017

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