Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC103 (coiled-coil domain containing 103)

Identity

Alias (NCBI)CILD17
PR46b
SMH
HGNC (Hugo) CCDC103
HGNC Alias symbFLJ13094
FLJ34211
PR46b
CILD17
LocusID (NCBI) 388389
Atlas_Id 61462
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44899712 and ends at 44903679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC103 (17q21.31) / NCALD (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC103   32700
Cards
Entrez_Gene (NCBI)CCDC103  388389  coiled-coil domain containing 103
AliasesCILD17; PR46b; SMH
GeneCards (Weizmann)CCDC103
Ensembl hg19 (Hinxton)ENSG00000167131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167131 [Gene_View]  ENSG00000167131 [Sequence]  chr17:44899712-44903679 [Contig_View]  CCDC103 [Vega]
ICGC DataPortalENSG00000167131
TCGA cBioPortalCCDC103
AceView (NCBI)CCDC103
Genatlas (Paris)CCDC103
WikiGenes388389
SOURCE (Princeton)CCDC103
Genetics Home Reference (NIH)CCDC103
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC103  -     chr17:44899712-44903679 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC103  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC103 - 17q21.31 [CytoView hg19]  CCDC103 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000167131
genome Data Viewer NCBICCDC103 [Mapview hg19]  
OMIM614677   614679   
Gene and transcription
Genbank (Entrez)AK289760 BC041060 BQ448043 DA185416 DA749894
RefSeq transcript (Entrez)NM_001258395 NM_001258396 NM_001258397 NM_001258398 NM_001258399 NM_213607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC103
Alternative Splicing GalleryENSG00000167131
Gene ExpressionCCDC103 [ NCBI-GEO ]   CCDC103 [ EBI - ARRAY_EXPRESS ]   CCDC103 [ SEEK ]   CCDC103 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC103 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC103 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388389
GTEX Portal (Tissue expression)CCDC103
Human Protein AtlasENSG00000167131-CCDC103 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW40
Splice isoforms : SwissVarQ8IW40
PhosPhoSitePlusQ8IW40
Domains : Interpro (EBI)CC103    Dynein_attach_N    RPAP3-like_C   
Domain families : Pfam (Sanger)Dynein_attach_N (PF15867)    RPAP3_C (PF13877)   
Domain families : Pfam (NCBI)pfam15867    pfam13877   
Conserved Domain (NCBI)CCDC103
DMDM Disease mutations388389
Blocks (Seattle)CCDC103
SuperfamilyQ8IW40
Human Protein Atlas [tissue]ENSG00000167131-CCDC103 [tissue]
Peptide AtlasQ8IW40
HPRD14200
IPIIPI00165251   IPI00916486   IPI00916201   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW40
IntAct (EBI)Q8IW40
FunCoupENSG00000167131
BioGRIDCCDC103
STRING (EMBL)CCDC103
ZODIACCCDC103
Ontologies - Pathways
QuickGOQ8IW40
Ontology : AmiGOheart looping  cilium movement  epithelial cilium movement  protein binding  extracellular region  cytoplasm  axoneme  determination of left/right symmetry  motile cilium  outer dynein arm  outer dynein arm assembly  inner dynein arm assembly  inner dynein arm assembly  protein homodimerization activity  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  
Ontology : EGO-EBIheart looping  cilium movement  epithelial cilium movement  protein binding  extracellular region  cytoplasm  axoneme  determination of left/right symmetry  motile cilium  outer dynein arm  outer dynein arm assembly  inner dynein arm assembly  inner dynein arm assembly  protein homodimerization activity  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  
NDEx NetworkCCDC103
Atlas of Cancer Signalling NetworkCCDC103
Wikipedia pathwaysCCDC103
Orthology - Evolution
OrthoDB388389
GeneTree (enSembl)ENSG00000167131
Phylogenetic Trees/Animal Genes : TreeFamCCDC103
HOGENOMQ8IW40
Homologs : HomoloGeneCCDC103
Homology/Alignments : Family Browser (UCSC)CCDC103
Gene fusions - Rearrangements
Fusion : QuiverCCDC103
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC103 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC103
dbVarCCDC103
ClinVarCCDC103
1000_GenomesCCDC103 
Exome Variant ServerCCDC103
GNOMAD BrowserENSG00000167131
Varsome BrowserCCDC103
Genetic variants : HAPMAP388389
Genomic Variants (DGV)CCDC103 [DGVbeta]
DECIPHERCCDC103 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC103 
Mutations
ICGC Data PortalCCDC103 
TCGA Data PortalCCDC103 
Broad Tumor PortalCCDC103
OASIS PortalCCDC103 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC103  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC103
Mutations and Diseases : HGMDCCDC103
BioMutasearch CCDC103
DgiDB (Drug Gene Interaction Database)CCDC103
DoCM (Curated mutations)CCDC103 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC103 (select a term)
intoGenCCDC103
Cancer3DCCDC103(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614677    614679   
Orphanet665   
DisGeNETCCDC103
MedgenCCDC103
Genetic Testing Registry CCDC103
NextProtQ8IW40 [Medical]
TSGene388389
GENETestsCCDC103
Target ValidationCCDC103
Huge Navigator CCDC103 [HugePedia]
snp3D : Map Gene to Disease388389
BioCentury BCIQCCDC103
ClinGenCCDC103
Clinical trials, drugs, therapy
Protein Interactions : CTD388389
Pharm GKB GenePA145008596
Clinical trialCCDC103
Miscellaneous
canSAR (ICR)CCDC103 (select the gene name)
HarmonizomeCCDC103
DataMed IndexCCDC103
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC103
EVEXCCDC103
GoPubMedCCDC103
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:50:33 CEST 2020

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