Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC103 (coiled-coil domain containing 103)

Identity

Alias_symbol (synonym)FLJ13094
FLJ34211
PR46b
CILD17
Other aliasSMH
HGNC (Hugo) CCDC103
LocusID (NCBI) 388389
Atlas_Id 61462
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44899712 and ends at 44903679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC103 (17q21.31) / NCALD (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC103   32700
Cards
Entrez_Gene (NCBI)CCDC103  388389  coiled-coil domain containing 103
AliasesCILD17; PR46b; SMH
GeneCards (Weizmann)CCDC103
Ensembl hg19 (Hinxton)ENSG00000214447 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214447 [Gene_View]  chr17:44899712-44903679 [Contig_View]  CCDC103 [Vega]
ICGC DataPortalENSG00000214447
TCGA cBioPortalCCDC103
AceView (NCBI)CCDC103
Genatlas (Paris)CCDC103
WikiGenes388389
SOURCE (Princeton)CCDC103
Genetics Home Reference (NIH)CCDC103
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC103  -     chr17:44899712-44903679 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC103  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC103 - 17q21.31 [CytoView hg19]  CCDC103 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC103 [Mapview hg19]  CCDC103 [Mapview hg38]
OMIM614677   614679   
Gene and transcription
Genbank (Entrez)AK091530 AK289760 BC041060 BQ448043 DA185416
RefSeq transcript (Entrez)NM_001258395 NM_001258396 NM_001258397 NM_001258398 NM_001258399 NM_213607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC103
Cluster EST : UnigeneHs.743398 [ NCBI ]
CGAP (NCI)Hs.743398
Alternative Splicing GalleryENSG00000214447
Gene ExpressionCCDC103 [ NCBI-GEO ]   CCDC103 [ EBI - ARRAY_EXPRESS ]   CCDC103 [ SEEK ]   CCDC103 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC103 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388389
GTEX Portal (Tissue expression)CCDC103
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW40
Splice isoforms : SwissVarQ8IW40
PhosPhoSitePlusQ8IW40
Domains : Interpro (EBI)Dynein_attach_N    RPAP3-like_C   
Domain families : Pfam (Sanger)Dynein_attach_N (PF15867)    RPAP3_C (PF13877)   
Domain families : Pfam (NCBI)pfam15867    pfam13877   
Conserved Domain (NCBI)CCDC103
DMDM Disease mutations388389
Blocks (Seattle)CCDC103
SuperfamilyQ8IW40
Human Protein AtlasENSG00000214447
Peptide AtlasQ8IW40
HPRD14200
IPIIPI00165251   IPI00916486   IPI00916201   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW40
IntAct (EBI)Q8IW40
FunCoupENSG00000214447
BioGRIDCCDC103
STRING (EMBL)CCDC103
ZODIACCCDC103
Ontologies - Pathways
QuickGOQ8IW40
Ontology : AmiGOheart looping  cilium movement  protein binding  cytoplasm  axoneme  motile cilium  outer dynein arm assembly  inner dynein arm assembly  protein homodimerization activity  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  
Ontology : EGO-EBIheart looping  cilium movement  protein binding  cytoplasm  axoneme  motile cilium  outer dynein arm assembly  inner dynein arm assembly  protein homodimerization activity  epithelial cilium movement involved in determination of left/right asymmetry  axonemal dynein complex assembly  determination of digestive tract left/right asymmetry  
NDEx NetworkCCDC103
Atlas of Cancer Signalling NetworkCCDC103
Wikipedia pathwaysCCDC103
Orthology - Evolution
OrthoDB388389
GeneTree (enSembl)ENSG00000214447
Phylogenetic Trees/Animal Genes : TreeFamCCDC103
HOVERGENQ8IW40
HOGENOMQ8IW40
Homologs : HomoloGeneCCDC103
Homology/Alignments : Family Browser (UCSC)CCDC103
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC103 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC103
dbVarCCDC103
ClinVarCCDC103
1000_GenomesCCDC103 
Exome Variant ServerCCDC103
ExAC (Exome Aggregation Consortium)CCDC103 (select the gene name)
Genetic variants : HAPMAP388389
Genomic Variants (DGV)CCDC103 [DGVbeta]
DECIPHERCCDC103 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC103 
Mutations
ICGC Data PortalCCDC103 
TCGA Data PortalCCDC103 
Broad Tumor PortalCCDC103
OASIS PortalCCDC103 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC103  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC103
BioMutasearch CCDC103
DgiDB (Drug Gene Interaction Database)CCDC103
DoCM (Curated mutations)CCDC103 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC103 (select a term)
intoGenCCDC103
Cancer3DCCDC103(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614677    614679   
Orphanet665   
MedgenCCDC103
Genetic Testing Registry CCDC103
NextProtQ8IW40 [Medical]
TSGene388389
GENETestsCCDC103
Target ValidationCCDC103
Huge Navigator CCDC103 [HugePedia]
snp3D : Map Gene to Disease388389
BioCentury BCIQCCDC103
ClinGenCCDC103
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388389
Chemical/Pharm GKB GenePA145008596
Clinical trialCCDC103
Miscellaneous
canSAR (ICR)CCDC103 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC103
EVEXCCDC103
GoPubMedCCDC103
iHOPCCDC103
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.