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CCDC105 (coiled-coil domain containing 105)

Identity

Alias_symbol (synonym)FLJ40365
Other alias-
HGNC (Hugo) CCDC105
LocusID (NCBI) 126402
Atlas_Id 61463
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15010727 and ends at 15023271 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MZF1 (19q13.43) / CCDC105 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC105   26866
Cards
Entrez_Gene (NCBI)CCDC105  126402  coiled-coil domain containing 105
Aliases
GeneCards (Weizmann)CCDC105
Ensembl hg19 (Hinxton)ENSG00000160994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160994 [Gene_View]  chr19:15010727-15023271 [Contig_View]  CCDC105 [Vega]
ICGC DataPortalENSG00000160994
TCGA cBioPortalCCDC105
AceView (NCBI)CCDC105
Genatlas (Paris)CCDC105
WikiGenes126402
SOURCE (Princeton)CCDC105
Genetics Home Reference (NIH)CCDC105
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC105  -     chr19:15010727-15023271 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC105  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblCCDC105 - 19p13.12 [CytoView hg19]  CCDC105 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBICCDC105 [Mapview hg19]  CCDC105 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097684 AL833847 BC035678
RefSeq transcript (Entrez)NM_173482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC105
Cluster EST : UnigeneHs.375985 [ NCBI ]
CGAP (NCI)Hs.375985
Alternative Splicing GalleryENSG00000160994
Gene ExpressionCCDC105 [ NCBI-GEO ]   CCDC105 [ EBI - ARRAY_EXPRESS ]   CCDC105 [ SEEK ]   CCDC105 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC105 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126402
GTEX Portal (Tissue expression)CCDC105
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYK2
Splice isoforms : SwissVarQ8IYK2
PhosPhoSitePlusQ8IYK2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC105
DMDM Disease mutations126402
Blocks (Seattle)CCDC105
SuperfamilyQ8IYK2
Human Protein AtlasENSG00000160994
Peptide AtlasQ8IYK2
HPRD08280
IPIIPI00217791   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYK2
IntAct (EBI)Q8IYK2
FunCoupENSG00000160994
BioGRIDCCDC105
STRING (EMBL)CCDC105
ZODIACCCDC105
Ontologies - Pathways
QuickGOQ8IYK2
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkCCDC105
Atlas of Cancer Signalling NetworkCCDC105
Wikipedia pathwaysCCDC105
Orthology - Evolution
OrthoDB126402
GeneTree (enSembl)ENSG00000160994
Phylogenetic Trees/Animal Genes : TreeFamCCDC105
HOVERGENQ8IYK2
HOGENOMQ8IYK2
Homologs : HomoloGeneCCDC105
Homology/Alignments : Family Browser (UCSC)CCDC105
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC105 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC105
dbVarCCDC105
ClinVarCCDC105
1000_GenomesCCDC105 
Exome Variant ServerCCDC105
ExAC (Exome Aggregation Consortium)CCDC105 (select the gene name)
Genetic variants : HAPMAP126402
Genomic Variants (DGV)CCDC105 [DGVbeta]
DECIPHERCCDC105 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC105 
Mutations
ICGC Data PortalCCDC105 
TCGA Data PortalCCDC105 
Broad Tumor PortalCCDC105
OASIS PortalCCDC105 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC105  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC105
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC105
DgiDB (Drug Gene Interaction Database)CCDC105
DoCM (Curated mutations)CCDC105 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC105 (select a term)
intoGenCCDC105
Cancer3DCCDC105(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC105
Genetic Testing Registry CCDC105
NextProtQ8IYK2 [Medical]
TSGene126402
GENETestsCCDC105
Target ValidationCCDC105
Huge Navigator CCDC105 [HugePedia]
snp3D : Map Gene to Disease126402
BioCentury BCIQCCDC105
ClinGenCCDC105
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126402
Chemical/Pharm GKB GenePA145008634
Clinical trialCCDC105
Miscellaneous
canSAR (ICR)CCDC105 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC105
EVEXCCDC105
GoPubMedCCDC105
iHOPCCDC105
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:00 CEST 2017

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