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CCDC106 (coiled-coil domain containing 106)

Identity

Alias_symbol (synonym)HSU79303
Other aliasZNF581
HGNC (Hugo) CCDC106
LocusID (NCBI) 29903
Atlas_Id 61464
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55647588 and ends at 55653160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANK3 (10q21.2) / CCDC106 (19q13.42)CCDC106 (19q13.42) / CCDC106 (19q13.42)CCDC106 (19q13.42) / CD37 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC106   30181
Cards
Entrez_Gene (NCBI)CCDC106  29903  coiled-coil domain containing 106
AliasesHSU79303; ZNF581
GeneCards (Weizmann)CCDC106
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:55647588-55653160 [Contig_View]  CCDC106 [Vega]
TCGA cBioPortalCCDC106
AceView (NCBI)CCDC106
Genatlas (Paris)CCDC106
WikiGenes29903
SOURCE (Princeton)CCDC106
Genetics Home Reference (NIH)CCDC106
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC106  -     chr19:55647588-55653160 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC106  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblCCDC106 - 19q13.42 [CytoView hg19]  CCDC106 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBICCDC106 [Mapview hg19]  CCDC106 [Mapview hg38]
OMIM613478   
Gene and transcription
Genbank (Entrez)AF054984 AK097095 AY927563 AY927628 BC000412
RefSeq transcript (Entrez)NM_013301
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC106
Cluster EST : UnigeneHs.82482 [ NCBI ]
CGAP (NCI)Hs.82482
Gene ExpressionCCDC106 [ NCBI-GEO ]   CCDC106 [ EBI - ARRAY_EXPRESS ]   CCDC106 [ SEEK ]   CCDC106 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC106 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29903
GTEX Portal (Tissue expression)CCDC106
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWC9
Splice isoforms : SwissVarQ9BWC9
PhosPhoSitePlusQ9BWC9
Domains : Interpro (EBI)CCDC106   
Domain families : Pfam (Sanger)CCDC106 (PF15794)   
Domain families : Pfam (NCBI)pfam15794   
Conserved Domain (NCBI)CCDC106
DMDM Disease mutations29903
Blocks (Seattle)CCDC106
SuperfamilyQ9BWC9
Peptide AtlasQ9BWC9
HPRD09995
IPIIPI00107188   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWC9
IntAct (EBI)Q9BWC9
BioGRIDCCDC106
STRING (EMBL)CCDC106
ZODIACCCDC106
Ontologies - Pathways
QuickGOQ9BWC9
Ontology : AmiGOprotein binding  nucleus  cytosol  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  
NDEx NetworkCCDC106
Atlas of Cancer Signalling NetworkCCDC106
Wikipedia pathwaysCCDC106
Orthology - Evolution
OrthoDB29903
Phylogenetic Trees/Animal Genes : TreeFamCCDC106
HOVERGENQ9BWC9
HOGENOMQ9BWC9
Homologs : HomoloGeneCCDC106
Homology/Alignments : Family Browser (UCSC)CCDC106
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC106
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC106 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC106
dbVarCCDC106
ClinVarCCDC106
1000_GenomesCCDC106 
Exome Variant ServerCCDC106
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29903
Genomic Variants (DGV)CCDC106 [DGVbeta]
DECIPHERCCDC106 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC106 
Mutations
ICGC Data PortalCCDC106 
TCGA Data PortalCCDC106 
Broad Tumor PortalCCDC106
OASIS PortalCCDC106 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC106  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC106
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC106
DgiDB (Drug Gene Interaction Database)CCDC106
DoCM (Curated mutations)CCDC106 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC106 (select a term)
intoGenCCDC106
Cancer3DCCDC106(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613478   
Orphanet
DisGeNETCCDC106
MedgenCCDC106
Genetic Testing Registry CCDC106
NextProtQ9BWC9 [Medical]
TSGene29903
GENETestsCCDC106
Target ValidationCCDC106
Huge Navigator CCDC106 [HugePedia]
snp3D : Map Gene to Disease29903
BioCentury BCIQCCDC106
ClinGenCCDC106
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29903
Chemical/Pharm GKB GenePA145008652
Clinical trialCCDC106
Miscellaneous
canSAR (ICR)CCDC106 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC106
EVEXCCDC106
GoPubMedCCDC106
iHOPCCDC106
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:17 CET 2017

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