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CCDC107 (coiled-coil domain containing 107)

Identity

Alias_symbol (synonym)MGC31967
Other aliasPSEC0222
HGNC (Hugo) CCDC107
LocusID (NCBI) 203260
Atlas_Id 61465
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35658290 and ends at 35661503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RFX1 (19p13.12) / CCDC107 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC107   28465
Cards
Entrez_Gene (NCBI)CCDC107  203260  coiled-coil domain containing 107
AliasesPSEC0222
GeneCards (Weizmann)CCDC107
Ensembl hg19 (Hinxton)ENSG00000159884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159884 [Gene_View]  chr9:35658290-35661503 [Contig_View]  CCDC107 [Vega]
ICGC DataPortalENSG00000159884
TCGA cBioPortalCCDC107
AceView (NCBI)CCDC107
Genatlas (Paris)CCDC107
WikiGenes203260
SOURCE (Princeton)CCDC107
Genetics Home Reference (NIH)CCDC107
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC107  -     chr9:35658290-35661503 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC107  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC107 - 9p13.3 [CytoView hg19]  CCDC107 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC107 [Mapview hg19]  CCDC107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075523 AK307223 BC018758 BC051285 BE903559
RefSeq transcript (Entrez)NM_001195200 NM_001195201 NM_001195217 NM_174923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC107
Cluster EST : UnigeneHs.745107 [ NCBI ]
CGAP (NCI)Hs.745107
Alternative Splicing GalleryENSG00000159884
Gene ExpressionCCDC107 [ NCBI-GEO ]   CCDC107 [ EBI - ARRAY_EXPRESS ]   CCDC107 [ SEEK ]   CCDC107 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203260
GTEX Portal (Tissue expression)CCDC107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV48
Splice isoforms : SwissVarQ8WV48
PhosPhoSitePlusQ8WV48
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC107
DMDM Disease mutations203260
Blocks (Seattle)CCDC107
SuperfamilyQ8WV48
Human Protein AtlasENSG00000159884
Peptide AtlasQ8WV48
HPRD14545
IPIIPI00640546   IPI00103020   IPI00896420   IPI00514243   IPI00642884   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV48
IntAct (EBI)Q8WV48
FunCoupENSG00000159884
BioGRIDCCDC107
STRING (EMBL)CCDC107
ZODIACCCDC107
Ontologies - Pathways
QuickGOQ8WV48
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCCDC107
Atlas of Cancer Signalling NetworkCCDC107
Wikipedia pathwaysCCDC107
Orthology - Evolution
OrthoDB203260
GeneTree (enSembl)ENSG00000159884
Phylogenetic Trees/Animal Genes : TreeFamCCDC107
HOVERGENQ8WV48
HOGENOMQ8WV48
Homologs : HomoloGeneCCDC107
Homology/Alignments : Family Browser (UCSC)CCDC107
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC107
dbVarCCDC107
ClinVarCCDC107
1000_GenomesCCDC107 
Exome Variant ServerCCDC107
ExAC (Exome Aggregation Consortium)CCDC107 (select the gene name)
Genetic variants : HAPMAP203260
Genomic Variants (DGV)CCDC107 [DGVbeta]
DECIPHERCCDC107 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC107 
Mutations
ICGC Data PortalCCDC107 
TCGA Data PortalCCDC107 
Broad Tumor PortalCCDC107
OASIS PortalCCDC107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC107
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC107
DgiDB (Drug Gene Interaction Database)CCDC107
DoCM (Curated mutations)CCDC107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC107 (select a term)
intoGenCCDC107
Cancer3DCCDC107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC107
Genetic Testing Registry CCDC107
NextProtQ8WV48 [Medical]
TSGene203260
GENETestsCCDC107
Target ValidationCCDC107
Huge Navigator CCDC107 [HugePedia]
snp3D : Map Gene to Disease203260
BioCentury BCIQCCDC107
ClinGenCCDC107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203260
Chemical/Pharm GKB GenePA145008668
Clinical trialCCDC107
Miscellaneous
canSAR (ICR)CCDC107 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC107
EVEXCCDC107
GoPubMedCCDC107
iHOPCCDC107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:00 CEST 2017

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