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CCDC108 (coiled-coil domain containing 108)

Identity

Other alias-
HGNC (Hugo) CCDC108
LocusID (NCBI) 255101
Atlas_Id 61466
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219891270 and ends at 219906273 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC108   25325
Cards
Entrez_Gene (NCBI)CCDC108  255101  coiled-coil domain containing 108
Aliases
GeneCards (Weizmann)CCDC108
Ensembl hg19 (Hinxton)ENSG00000181378 [Gene_View]  chr2:219891270-219906273 [Contig_View]  CCDC108 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181378 [Gene_View]  chr2:219891270-219906273 [Contig_View]  CCDC108 [Vega]
ICGC DataPortalENSG00000181378
TCGA cBioPortalCCDC108
AceView (NCBI)CCDC108
Genatlas (Paris)CCDC108
WikiGenes255101
SOURCE (Princeton)CCDC108
Genetics Home Reference (NIH)CCDC108
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC108  -     chr2:219891270-219906273 -  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC108  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblCCDC108 - 2q35 [CytoView hg19]  CCDC108 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICCDC108 [Mapview hg19]  CCDC108 [Mapview hg38]
OMIM614270   
Gene and transcription
Genbank (Entrez)AA503417 AK123235 AK125957 AK127189 AK302678
RefSeq transcript (Entrez)NM_001278295 NM_001278296 NM_152389 NM_194302
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CCDC108
Cluster EST : UnigeneHs.147762 [ NCBI ]
CGAP (NCI)Hs.147762
Alternative Splicing GalleryENSG00000181378
Gene ExpressionCCDC108 [ NCBI-GEO ]   CCDC108 [ EBI - ARRAY_EXPRESS ]   CCDC108 [ SEEK ]   CCDC108 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC108 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255101
GTEX Portal (Tissue expression)CCDC108
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU64
Splice isoforms : SwissVarQ6ZU64
PhosPhoSitePlusQ6ZU64
Domaine pattern : Prosite (Expaxy)MSP (PS50202)   
Domains : Interpro (EBI)MSP_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC108
DMDM Disease mutations255101
Blocks (Seattle)CCDC108
SuperfamilyQ6ZU64
Human Protein AtlasENSG00000181378
Peptide AtlasQ6ZU64
HPRD13201
IPIIPI00746946   IPI01015199   IPI00657672   IPI00916462   IPI00645641   IPI00916250   IPI00916886   IPI00926224   IPI00925613   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU64
IntAct (EBI)Q6ZU64
FunCoupENSG00000181378
BioGRIDCCDC108
STRING (EMBL)CCDC108
ZODIACCCDC108
Ontologies - Pathways
QuickGOQ6ZU64
Ontology : AmiGOprotein binding  integral component of membrane  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  integral component of membrane  poly(A) RNA binding  
NDEx NetworkCCDC108
Atlas of Cancer Signalling NetworkCCDC108
Wikipedia pathwaysCCDC108
Orthology - Evolution
OrthoDB255101
GeneTree (enSembl)ENSG00000181378
Phylogenetic Trees/Animal Genes : TreeFamCCDC108
HOVERGENQ6ZU64
HOGENOMQ6ZU64
Homologs : HomoloGeneCCDC108
Homology/Alignments : Family Browser (UCSC)CCDC108
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC108 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC108
dbVarCCDC108
ClinVarCCDC108
1000_GenomesCCDC108 
Exome Variant ServerCCDC108
ExAC (Exome Aggregation Consortium)CCDC108 (select the gene name)
Genetic variants : HAPMAP255101
Genomic Variants (DGV)CCDC108 [DGVbeta]
DECIPHER (Syndromes)2:219891270-219906273  ENSG00000181378
CONAN: Copy Number AnalysisCCDC108 
Mutations
ICGC Data PortalCCDC108 
TCGA Data PortalCCDC108 
Broad Tumor PortalCCDC108
OASIS PortalCCDC108 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC108  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC108
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC108
DgiDB (Drug Gene Interaction Database)CCDC108
DoCM (Curated mutations)CCDC108 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC108 (select a term)
intoGenCCDC108
Cancer3DCCDC108(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614270   
Orphanet
MedgenCCDC108
Genetic Testing Registry CCDC108
NextProtQ6ZU64 [Medical]
TSGene255101
GENETestsCCDC108
Huge Navigator CCDC108 [HugePedia]
snp3D : Map Gene to Disease255101
BioCentury BCIQCCDC108
ClinGenCCDC108
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255101
Chemical/Pharm GKB GenePA145008681
Clinical trialCCDC108
Miscellaneous
canSAR (ICR)CCDC108 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC108
EVEXCCDC108
GoPubMedCCDC108
iHOPCCDC108
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:18 CET 2017

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