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CCDC109B (coiled-coil domain containing 109B)

Identity

Other aliasMCUb
HGNC (Hugo) CCDC109B
LocusID (NCBI) 55013
Atlas_Id 61467
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 110481355 and ends at 110608872 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC109B (4q25) / C4BPA (1q32.2)CCDC109B (4q25) / TUBA1C (12q13.12)CEP112 (17q24.1) / CCDC109B (4q25)
COL25A1 (4q25) / CCDC109B (4q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC109B   26076
Cards
Entrez_Gene (NCBI)CCDC109B  55013  coiled-coil domain containing 109B
AliasesMCUb
GeneCards (Weizmann)CCDC109B
Ensembl hg19 (Hinxton)ENSG00000005059 [Gene_View]  chr4:110481355-110608872 [Contig_View]  CCDC109B [Vega]
Ensembl hg38 (Hinxton)ENSG00000005059 [Gene_View]  chr4:110481355-110608872 [Contig_View]  CCDC109B [Vega]
ICGC DataPortalENSG00000005059
TCGA cBioPortalCCDC109B
AceView (NCBI)CCDC109B
Genatlas (Paris)CCDC109B
WikiGenes55013
SOURCE (Princeton)CCDC109B
Genetics Home Reference (NIH)CCDC109B
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC109B  -     chr4:110481355-110608872 +  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC109B  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblCCDC109B - 4q25 [CytoView hg19]  CCDC109B - 4q25 [CytoView hg38]
Mapping of homologs : NCBICCDC109B [Mapview hg19]  CCDC109B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000654 AK095936 AK291098 AK311030 AL832311
RefSeq transcript (Entrez)NM_017918
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CCDC109B
Cluster EST : UnigeneHs.234149 [ NCBI ]
CGAP (NCI)Hs.234149
Alternative Splicing GalleryENSG00000005059
Gene ExpressionCCDC109B [ NCBI-GEO ]   CCDC109B [ EBI - ARRAY_EXPRESS ]   CCDC109B [ SEEK ]   CCDC109B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC109B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55013
GTEX Portal (Tissue expression)CCDC109B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWR8
Splice isoforms : SwissVarQ9NWR8
PhosPhoSitePlusQ9NWR8
Domains : Interpro (EBI)Coiled-coil-dom_prot_109_C   
Domain families : Pfam (Sanger)DUF607 (PF04678)   
Domain families : Pfam (NCBI)pfam04678   
Conserved Domain (NCBI)CCDC109B
DMDM Disease mutations55013
Blocks (Seattle)CCDC109B
SuperfamilyQ9NWR8
Human Protein AtlasENSG00000005059
Peptide AtlasQ9NWR8
HPRD07939
IPIIPI00178611   IPI00965797   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWR8
IntAct (EBI)Q9NWR8
FunCoupENSG00000005059
BioGRIDCCDC109B
STRING (EMBL)CCDC109B
ZODIACCCDC109B
Ontologies - Pathways
QuickGOQ9NWR8
Ontology : AmiGOion channel activity  mitochondrion  mitochondrial calcium ion transport  calcium channel inhibitor activity  intrinsic component of membrane  integral component of mitochondrial inner membrane  calcium channel complex  mitochondrial calcium ion homeostasis  uniplex complex  
Ontology : EGO-EBIion channel activity  mitochondrion  mitochondrial calcium ion transport  calcium channel inhibitor activity  intrinsic component of membrane  integral component of mitochondrial inner membrane  calcium channel complex  mitochondrial calcium ion homeostasis  uniplex complex  
NDEx NetworkCCDC109B
Atlas of Cancer Signalling NetworkCCDC109B
Wikipedia pathwaysCCDC109B
Orthology - Evolution
OrthoDB55013
GeneTree (enSembl)ENSG00000005059
Phylogenetic Trees/Animal Genes : TreeFamCCDC109B
HOVERGENQ9NWR8
HOGENOMQ9NWR8
Homologs : HomoloGeneCCDC109B
Homology/Alignments : Family Browser (UCSC)CCDC109B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC109B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC109B
dbVarCCDC109B
ClinVarCCDC109B
1000_GenomesCCDC109B 
Exome Variant ServerCCDC109B
ExAC (Exome Aggregation Consortium)CCDC109B (select the gene name)
Genetic variants : HAPMAP55013
Genomic Variants (DGV)CCDC109B [DGVbeta]
DECIPHER (Syndromes)4:110481355-110608872  ENSG00000005059
CONAN: Copy Number AnalysisCCDC109B 
Mutations
ICGC Data PortalCCDC109B 
TCGA Data PortalCCDC109B 
Broad Tumor PortalCCDC109B
OASIS PortalCCDC109B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC109B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC109B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC109B
DgiDB (Drug Gene Interaction Database)CCDC109B
DoCM (Curated mutations)CCDC109B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC109B (select a term)
intoGenCCDC109B
Cancer3DCCDC109B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC109B
Genetic Testing Registry CCDC109B
NextProtQ9NWR8 [Medical]
TSGene55013
GENETestsCCDC109B
Huge Navigator CCDC109B [HugePedia]
snp3D : Map Gene to Disease55013
BioCentury BCIQCCDC109B
ClinGenCCDC109B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55013
Chemical/Pharm GKB GenePA145008731
Clinical trialCCDC109B
Miscellaneous
canSAR (ICR)CCDC109B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC109B
EVEXCCDC109B
GoPubMedCCDC109B
iHOPCCDC109B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:18 CET 2017

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