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CCDC110 (coiled-coil domain containing 110)

Identity

Alias_symbol (synonym)KM-HN-1
MGC33607
CT52
Other aliasKMHN1
HGNC (Hugo) CCDC110
LocusID (NCBI) 256309
Atlas_Id 46106
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 186366338 and ends at 186392913 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CFAP97 (4q35.1) / CCDC110 (4q35.1)KIAA1430 CCDC110 4q35.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC110   28504
Cards
Entrez_Gene (NCBI)CCDC110  256309  coiled-coil domain containing 110
AliasesCT52; KM-HN-1; KMHN1
GeneCards (Weizmann)CCDC110
Ensembl hg19 (Hinxton)ENSG00000168491 [Gene_View]  chr4:186366338-186392913 [Contig_View]  CCDC110 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168491 [Gene_View]  chr4:186366338-186392913 [Contig_View]  CCDC110 [Vega]
ICGC DataPortalENSG00000168491
TCGA cBioPortalCCDC110
AceView (NCBI)CCDC110
Genatlas (Paris)CCDC110
WikiGenes256309
SOURCE (Princeton)CCDC110
Genetics Home Reference (NIH)CCDC110
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC110  -     chr4:186366338-186392913 -  4q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC110  -     4q35.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC110 - 4q35.1 [CytoView hg19]  CCDC110 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBICCDC110 [Mapview hg19]  CCDC110 [Mapview hg38]
OMIM609488   
Gene and transcription
Genbank (Entrez)AB080722 AI949455 AK097605 AK302815 AL833337
RefSeq transcript (Entrez)NM_001145411 NM_152775
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CCDC110
Cluster EST : UnigeneHs.41101 [ NCBI ]
CGAP (NCI)Hs.41101
Alternative Splicing GalleryENSG00000168491
Gene ExpressionCCDC110 [ NCBI-GEO ]   CCDC110 [ EBI - ARRAY_EXPRESS ]   CCDC110 [ SEEK ]   CCDC110 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC110 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256309
GTEX Portal (Tissue expression)CCDC110
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBZ0
Splice isoforms : SwissVarQ8TBZ0
PhosPhoSitePlusQ8TBZ0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC110
DMDM Disease mutations256309
Blocks (Seattle)CCDC110
SuperfamilyQ8TBZ0
Human Protein AtlasENSG00000168491
Peptide AtlasQ8TBZ0
HPRD11335
IPIIPI00152318   IPI00784583   IPI00966653   IPI00965968   IPI00966886   IPI00966553   IPI00966274   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBZ0
IntAct (EBI)Q8TBZ0
FunCoupENSG00000168491
BioGRIDCCDC110
STRING (EMBL)CCDC110
ZODIACCCDC110
Ontologies - Pathways
QuickGOQ8TBZ0
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  intracellular membrane-bounded organelle  
NDEx NetworkCCDC110
Atlas of Cancer Signalling NetworkCCDC110
Wikipedia pathwaysCCDC110
Orthology - Evolution
OrthoDB256309
GeneTree (enSembl)ENSG00000168491
Phylogenetic Trees/Animal Genes : TreeFamCCDC110
HOVERGENQ8TBZ0
HOGENOMQ8TBZ0
Homologs : HomoloGeneCCDC110
Homology/Alignments : Family Browser (UCSC)CCDC110
Gene fusions - Rearrangements
Fusion : MitelmanCFAP97/CCDC110 [4q35.1/4q35.1]  [t(4;4)(q35;q35)]  
Fusion: TCGAKIAA1430 CCDC110 4q35.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC110 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC110
dbVarCCDC110
ClinVarCCDC110
1000_GenomesCCDC110 
Exome Variant ServerCCDC110
ExAC (Exome Aggregation Consortium)CCDC110 (select the gene name)
Genetic variants : HAPMAP256309
Genomic Variants (DGV)CCDC110 [DGVbeta]
DECIPHER (Syndromes)4:186366338-186392913  ENSG00000168491
CONAN: Copy Number AnalysisCCDC110 
Mutations
ICGC Data PortalCCDC110 
TCGA Data PortalCCDC110 
Broad Tumor PortalCCDC110
OASIS PortalCCDC110 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC110  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC110
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC110
DgiDB (Drug Gene Interaction Database)CCDC110
DoCM (Curated mutations)CCDC110 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC110 (select a term)
intoGenCCDC110
Cancer3DCCDC110(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609488   
Orphanet
MedgenCCDC110
Genetic Testing Registry CCDC110
NextProtQ8TBZ0 [Medical]
TSGene256309
GENETestsCCDC110
Huge Navigator CCDC110 [HugePedia]
snp3D : Map Gene to Disease256309
BioCentury BCIQCCDC110
ClinGenCCDC110
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256309
Chemical/Pharm GKB GenePA162381283
Clinical trialCCDC110
Miscellaneous
canSAR (ICR)CCDC110 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC110
EVEXCCDC110
GoPubMedCCDC110
iHOPCCDC110
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:12 CEST 2017

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