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CCDC112 (coiled-coil domain containing 112)

Identity

Alias (NCBI)MBC1
HGNC (Hugo) CCDC112
HGNC Alias symbMGC39633
LocusID (NCBI) 153733
Atlas_Id 61468
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115267188 and ends at 115296290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC112 (5q22.3) / FN1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC112   28599
Cards
Entrez_Gene (NCBI)CCDC112    coiled-coil domain containing 112
AliasesMBC1
GeneCards (Weizmann)CCDC112
Ensembl hg19 (Hinxton)ENSG00000164221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164221 [Gene_View]  ENSG00000164221 [Sequence]  chr5:115267188-115296290 [Contig_View]  CCDC112 [Vega]
ICGC DataPortalENSG00000164221
TCGA cBioPortalCCDC112
AceView (NCBI)CCDC112
Genatlas (Paris)CCDC112
SOURCE (Princeton)CCDC112
Genetics Home Reference (NIH)CCDC112
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC112  -     chr5:115267188-115296290 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC112  -     5q22.3   [Description]    (hg19-Feb_2009)
GoldenPathCCDC112 - 5q22.3 [CytoView hg19]  CCDC112 - 5q22.3 [CytoView hg38]
ImmunoBaseENSG00000164221
Genome Data Viewer NCBICCDC112 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ580807 AK307327 BC031242 BM873447 BM873516
RefSeq transcript (Entrez)NM_001040440 NM_001375896 NM_001375897 NM_001375898 NM_001375899 NM_152549
Consensus coding sequences : CCDS (NCBI)CCDC112
Gene ExpressionCCDC112 [ NCBI-GEO ]   CCDC112 [ EBI - ARRAY_EXPRESS ]   CCDC112 [ SEEK ]   CCDC112 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC112 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC112 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153733
GTEX Portal (Tissue expression)CCDC112
Human Protein AtlasENSG00000164221-CCDC112 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEF3
PhosPhoSitePlusQ8NEF3
Domains : Interpro (EBI)CCDC148/CCDC112   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC112
SuperfamilyQ8NEF3
AlphaFold pdb e-kbQ8NEF3   
Human Protein Atlas [tissue]ENSG00000164221-CCDC112 [tissue]
HPRD11346
Protein Interaction databases
DIP (DOE-UCLA)Q8NEF3
IntAct (EBI)Q8NEF3
BioGRIDCCDC112
STRING (EMBL)CCDC112
ZODIACCCDC112
Ontologies - Pathways
QuickGOQ8NEF3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC112
Atlas of Cancer Signalling NetworkCCDC112
Wikipedia pathwaysCCDC112
Orthology - Evolution
OrthoDB153733
GeneTree (enSembl)ENSG00000164221
Phylogenetic Trees/Animal Genes : TreeFamCCDC112
Homologs : HomoloGeneCCDC112
Homology/Alignments : Family Browser (UCSC)CCDC112
Gene fusions - Rearrangements
Fusion : QuiverCCDC112
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC112
dbVarCCDC112
ClinVarCCDC112
MonarchCCDC112
1000_GenomesCCDC112 
Exome Variant ServerCCDC112
GNOMAD BrowserENSG00000164221
Varsome BrowserCCDC112
ACMGCCDC112 variants
VarityQ8NEF3
Genomic Variants (DGV)CCDC112 [DGVbeta]
DECIPHERCCDC112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC112 
Mutations
ICGC Data PortalCCDC112 
TCGA Data PortalCCDC112 
Broad Tumor PortalCCDC112
OASIS PortalCCDC112 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC112  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC112
Mutations and Diseases : HGMDCCDC112
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC112
DgiDB (Drug Gene Interaction Database)CCDC112
DoCM (Curated mutations)CCDC112
CIViC (Clinical Interpretations of Variants in Cancer)CCDC112
Cancer3DCCDC112
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC112
MedgenCCDC112
Genetic Testing Registry CCDC112
NextProtQ8NEF3 [Medical]
GENETestsCCDC112
Target ValidationCCDC112
Huge Navigator CCDC112 [HugePedia]
ClinGenCCDC112
Clinical trials, drugs, therapy
MyCancerGenomeCCDC112
Protein Interactions : CTDCCDC112
Pharm GKB GenePA145008783
PharosQ8NEF3
Clinical trialCCDC112
Miscellaneous
canSAR (ICR)CCDC112
HarmonizomeCCDC112
DataMed IndexCCDC112
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:00 CEST 2021

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