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CCDC112 (coiled-coil domain containing 112)

Identity

Alias_symbol (synonym)MGC39633
Other aliasMBC1
HGNC (Hugo) CCDC112
LocusID (NCBI) 153733
Atlas_Id 61468
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115267188 and ends at 115296761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC112 (5q22.3) / FN1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC112   28599
Cards
Entrez_Gene (NCBI)CCDC112  153733  coiled-coil domain containing 112
AliasesMBC1
GeneCards (Weizmann)CCDC112
Ensembl hg19 (Hinxton)ENSG00000164221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164221 [Gene_View]  chr5:115267188-115296761 [Contig_View]  CCDC112 [Vega]
ICGC DataPortalENSG00000164221
TCGA cBioPortalCCDC112
AceView (NCBI)CCDC112
Genatlas (Paris)CCDC112
WikiGenes153733
SOURCE (Princeton)CCDC112
Genetics Home Reference (NIH)CCDC112
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC112  -     chr5:115267188-115296761 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC112  -     5q22.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC112 - 5q22.3 [CytoView hg19]  CCDC112 - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBICCDC112 [Mapview hg19]  CCDC112 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ580807 AK307327 BC031242 BM873447 BM873516
RefSeq transcript (Entrez)NM_001040440 NM_152549
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC112
Cluster EST : UnigeneHs.436121 [ NCBI ]
CGAP (NCI)Hs.436121
Alternative Splicing GalleryENSG00000164221
Gene ExpressionCCDC112 [ NCBI-GEO ]   CCDC112 [ EBI - ARRAY_EXPRESS ]   CCDC112 [ SEEK ]   CCDC112 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153733
GTEX Portal (Tissue expression)CCDC112
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEF3
Splice isoforms : SwissVarQ8NEF3
PhosPhoSitePlusQ8NEF3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC112
DMDM Disease mutations153733
Blocks (Seattle)CCDC112
SuperfamilyQ8NEF3
Human Protein AtlasENSG00000164221
Peptide AtlasQ8NEF3
HPRD11346
IPIIPI00746232   IPI00748003   IPI00964240   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEF3
IntAct (EBI)Q8NEF3
FunCoupENSG00000164221
BioGRIDCCDC112
STRING (EMBL)CCDC112
ZODIACCCDC112
Ontologies - Pathways
QuickGOQ8NEF3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC112
Atlas of Cancer Signalling NetworkCCDC112
Wikipedia pathwaysCCDC112
Orthology - Evolution
OrthoDB153733
GeneTree (enSembl)ENSG00000164221
Phylogenetic Trees/Animal Genes : TreeFamCCDC112
HOVERGENQ8NEF3
HOGENOMQ8NEF3
Homologs : HomoloGeneCCDC112
Homology/Alignments : Family Browser (UCSC)CCDC112
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC112
dbVarCCDC112
ClinVarCCDC112
1000_GenomesCCDC112 
Exome Variant ServerCCDC112
ExAC (Exome Aggregation Consortium)CCDC112 (select the gene name)
Genetic variants : HAPMAP153733
Genomic Variants (DGV)CCDC112 [DGVbeta]
DECIPHERCCDC112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC112 
Mutations
ICGC Data PortalCCDC112 
TCGA Data PortalCCDC112 
Broad Tumor PortalCCDC112
OASIS PortalCCDC112 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC112  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC112
DgiDB (Drug Gene Interaction Database)CCDC112
DoCM (Curated mutations)CCDC112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC112 (select a term)
intoGenCCDC112
Cancer3DCCDC112(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC112
Genetic Testing Registry CCDC112
NextProtQ8NEF3 [Medical]
TSGene153733
GENETestsCCDC112
Huge Navigator CCDC112 [HugePedia]
snp3D : Map Gene to Disease153733
BioCentury BCIQCCDC112
ClinGenCCDC112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153733
Chemical/Pharm GKB GenePA145008783
Clinical trialCCDC112
Miscellaneous
canSAR (ICR)CCDC112 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC112
EVEXCCDC112
GoPubMedCCDC112
iHOPCCDC112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:04:34 CEST 2017

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