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CCDC113 (coiled-coil domain containing 113)

Identity

Alias_symbol (synonym)HSPC065
DKFZp434N1418
Other alias
HGNC (Hugo) CCDC113
LocusID (NCBI) 29070
Atlas_Id 61469
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58283840 and ends at 58317734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF5B (2q11.2) / CCDC113 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC113   25002
Cards
Entrez_Gene (NCBI)CCDC113  29070  coiled-coil domain containing 113
AliasesHSPC065
GeneCards (Weizmann)CCDC113
Ensembl hg19 (Hinxton)ENSG00000103021 [Gene_View]  chr16:58283840-58317734 [Contig_View]  CCDC113 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103021 [Gene_View]  chr16:58283840-58317734 [Contig_View]  CCDC113 [Vega]
ICGC DataPortalENSG00000103021
TCGA cBioPortalCCDC113
AceView (NCBI)CCDC113
Genatlas (Paris)CCDC113
WikiGenes29070
SOURCE (Princeton)CCDC113
Genetics Home Reference (NIH)CCDC113
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC113  -     chr16:58283840-58317734 +  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC113  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblCCDC113 - 16q21 [CytoView hg19]  CCDC113 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICCDC113 [Mapview hg19]  CCDC113 [Mapview hg38]
OMIM616070   
Gene and transcription
Genbank (Entrez)AF161550 AK027208 AK299066 AK314300 AL136785
RefSeq transcript (Entrez)NM_001142302 NM_014157
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CCDC113
Cluster EST : UnigeneHs.11614 [ NCBI ]
CGAP (NCI)Hs.11614
Alternative Splicing GalleryENSG00000103021
Gene ExpressionCCDC113 [ NCBI-GEO ]   CCDC113 [ EBI - ARRAY_EXPRESS ]   CCDC113 [ SEEK ]   CCDC113 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC113 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29070
GTEX Portal (Tissue expression)CCDC113
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0I3
Splice isoforms : SwissVarQ9H0I3
PhosPhoSitePlusQ9H0I3
Domains : Interpro (EBI)DUF4201   
Domain families : Pfam (Sanger)DUF4201 (PF13870)   
Domain families : Pfam (NCBI)pfam13870   
Conserved Domain (NCBI)CCDC113
DMDM Disease mutations29070
Blocks (Seattle)CCDC113
SuperfamilyQ9H0I3
Human Protein AtlasENSG00000103021
Peptide AtlasQ9H0I3
HPRD07121
IPIIPI00001933   IPI00024515   IPI00909271   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0I3
IntAct (EBI)Q9H0I3
FunCoupENSG00000103021
BioGRIDCCDC113
STRING (EMBL)CCDC113
ZODIACCCDC113
Ontologies - Pathways
QuickGOQ9H0I3
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  centriolar satellite  cilium assembly  protein complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  centriolar satellite  cilium assembly  protein complex  
NDEx NetworkCCDC113
Atlas of Cancer Signalling NetworkCCDC113
Wikipedia pathwaysCCDC113
Orthology - Evolution
OrthoDB29070
GeneTree (enSembl)ENSG00000103021
Phylogenetic Trees/Animal Genes : TreeFamCCDC113
HOVERGENQ9H0I3
HOGENOMQ9H0I3
Homologs : HomoloGeneCCDC113
Homology/Alignments : Family Browser (UCSC)CCDC113
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC113 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC113
dbVarCCDC113
ClinVarCCDC113
1000_GenomesCCDC113 
Exome Variant ServerCCDC113
ExAC (Exome Aggregation Consortium)CCDC113 (select the gene name)
Genetic variants : HAPMAP29070
Genomic Variants (DGV)CCDC113 [DGVbeta]
DECIPHER (Syndromes)16:58283840-58317734  ENSG00000103021
CONAN: Copy Number AnalysisCCDC113 
Mutations
ICGC Data PortalCCDC113 
TCGA Data PortalCCDC113 
Broad Tumor PortalCCDC113
OASIS PortalCCDC113 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC113  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC113
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC113
DgiDB (Drug Gene Interaction Database)CCDC113
DoCM (Curated mutations)CCDC113 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC113 (select a term)
intoGenCCDC113
Cancer3DCCDC113(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616070   
Orphanet
MedgenCCDC113
Genetic Testing Registry CCDC113
NextProtQ9H0I3 [Medical]
TSGene29070
GENETestsCCDC113
Huge Navigator CCDC113 [HugePedia]
snp3D : Map Gene to Disease29070
BioCentury BCIQCCDC113
ClinGenCCDC113
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29070
Chemical/Pharm GKB GenePA145149245
Clinical trialCCDC113
Miscellaneous
canSAR (ICR)CCDC113 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC113
EVEXCCDC113
GoPubMedCCDC113
iHOPCCDC113
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:19 CET 2017

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