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CCDC115 (coiled-coil domain containing 115)

Identity

Alias_symbol (synonym)MGC12981
FLJ30131
ccp1
Other aliasCDG2O
HGNC (Hugo) CCDC115
LocusID (NCBI) 84317
Atlas_Id 57891
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130337933 and ends at 130342383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC115   28178
Cards
Entrez_Gene (NCBI)CCDC115  84317  coiled-coil domain containing 115
AliasesCDG2O; ccp1
GeneCards (Weizmann)CCDC115
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr2:130337933-130342383 [Contig_View]  CCDC115 [Vega]
TCGA cBioPortalCCDC115
AceView (NCBI)CCDC115
Genatlas (Paris)CCDC115
WikiGenes84317
SOURCE (Princeton)CCDC115
Genetics Home Reference (NIH)CCDC115
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC115  -     chr2:130337933-130342383 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC115  -     2q21.1   [Description]    (hg19-Feb_2009)
GoldenPathCCDC115 - 2q21.1 [CytoView hg19]  CCDC115 - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC115 [Mapview hg19]  CCDC115 [Mapview hg38]
OMIM613734   616828   
Gene and transcription
Genbank (Entrez)AA831631 AK054693 AK092196 AK124405 AK295922
RefSeq transcript (Entrez)NM_001321118 NM_001321119 NM_032357
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC115
Cluster EST : UnigeneHs.601991 [ NCBI ]
CGAP (NCI)Hs.601991
Gene ExpressionCCDC115 [ NCBI-GEO ]   CCDC115 [ EBI - ARRAY_EXPRESS ]   CCDC115 [ SEEK ]   CCDC115 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC115 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84317
GTEX Portal (Tissue expression)CCDC115
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NT0
Splice isoforms : SwissVarQ96NT0
PhosPhoSitePlusQ96NT0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC115
DMDM Disease mutations84317
Blocks (Seattle)CCDC115
SuperfamilyQ96NT0
Peptide AtlasQ96NT0
IPIIPI00152002   IPI00847567   IPI00916147   IPI00908697   
Protein Interaction databases
DIP (DOE-UCLA)Q96NT0
IntAct (EBI)Q96NT0
BioGRIDCCDC115
STRING (EMBL)CCDC115
ZODIACCCDC115
Ontologies - Pathways
QuickGOQ96NT0
Ontology : AmiGOlysosome  endosome  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cellular iron ion homeostasis  lysosomal lumen acidification  membrane  vacuolar proton-transporting V-type ATPase complex  COPI-coated vesicle  cellular response to increased oxygen levels  extrinsic component of endoplasmic reticulum membrane  unfolded protein binding  vacuolar proton-transporting V-type ATPase complex assembly  lysosomal protein catabolic process  
Ontology : EGO-EBIlysosome  endosome  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cellular iron ion homeostasis  lysosomal lumen acidification  membrane  vacuolar proton-transporting V-type ATPase complex  COPI-coated vesicle  cellular response to increased oxygen levels  extrinsic component of endoplasmic reticulum membrane  unfolded protein binding  vacuolar proton-transporting V-type ATPase complex assembly  lysosomal protein catabolic process  
NDEx NetworkCCDC115
Atlas of Cancer Signalling NetworkCCDC115
Wikipedia pathwaysCCDC115
Orthology - Evolution
OrthoDB84317
Phylogenetic Trees/Animal Genes : TreeFamCCDC115
HOGENOMQ96NT0
Homologs : HomoloGeneCCDC115
Homology/Alignments : Family Browser (UCSC)CCDC115
Gene fusions - Rearrangements
Fusion : QuiverCCDC115
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC115 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC115
dbVarCCDC115
ClinVarCCDC115
1000_GenomesCCDC115 
Exome Variant ServerCCDC115
Varsome BrowserCCDC115
Genetic variants : HAPMAP84317
Genomic Variants (DGV)CCDC115 [DGVbeta]
DECIPHERCCDC115 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC115 
Mutations
ICGC Data PortalCCDC115 
TCGA Data PortalCCDC115 
Broad Tumor PortalCCDC115
OASIS PortalCCDC115 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC115  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC115
Mutations and Diseases : HGMDCCDC115
BioMutasearch CCDC115
DgiDB (Drug Gene Interaction Database)CCDC115
DoCM (Curated mutations)CCDC115 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC115 (select a term)
intoGenCCDC115
Cancer3DCCDC115(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613734    616828   
Orphanet
DisGeNETCCDC115
MedgenCCDC115
Genetic Testing Registry CCDC115
NextProtQ96NT0 [Medical]
TSGene84317
GENETestsCCDC115
Target ValidationCCDC115
Huge Navigator CCDC115 [HugePedia]
snp3D : Map Gene to Disease84317
BioCentury BCIQCCDC115
ClinGenCCDC115
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84317
Chemical/Pharm GKB GenePA145149287
Clinical trialCCDC115
Miscellaneous
canSAR (ICR)CCDC115 (select the gene name)
DataMed IndexCCDC115
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC115
EVEXCCDC115
GoPubMedCCDC115
iHOPCCDC115
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:01:52 CEST 2019

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