Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC116 (coiled-coil domain containing 116)

Identity

Other alias-
HGNC (Hugo) CCDC116
LocusID (NCBI) 164592
Atlas_Id 57139
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21632729 and ends at 21637311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC116   26688
Cards
Entrez_Gene (NCBI)CCDC116  164592  coiled-coil domain containing 116
Aliases
GeneCards (Weizmann)CCDC116
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:21632729-21637311 [Contig_View]  CCDC116 [Vega]
TCGA cBioPortalCCDC116
AceView (NCBI)CCDC116
Genatlas (Paris)CCDC116
WikiGenes164592
SOURCE (Princeton)CCDC116
Genetics Home Reference (NIH)CCDC116
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC116  -     chr22:21632729-21637311 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC116  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblCCDC116 - 22q11.21 [CytoView hg19]  CCDC116 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBICCDC116 [Mapview hg19]  CCDC116 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093365 AK302030 BC033499 JF432229
RefSeq transcript (Entrez)NM_001331066 NM_152612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC116
Cluster EST : UnigeneHs.131615 [ NCBI ]
CGAP (NCI)Hs.131615
Gene ExpressionCCDC116 [ NCBI-GEO ]   CCDC116 [ EBI - ARRAY_EXPRESS ]   CCDC116 [ SEEK ]   CCDC116 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC116 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164592
GTEX Portal (Tissue expression)CCDC116
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYX3
Splice isoforms : SwissVarQ8IYX3
PhosPhoSitePlusQ8IYX3
Domains : Interpro (EBI)DUF4702   
Domain families : Pfam (Sanger)DUF4702 (PF15774)   
Domain families : Pfam (NCBI)pfam15774   
Conserved Domain (NCBI)CCDC116
DMDM Disease mutations164592
Blocks (Seattle)CCDC116
SuperfamilyQ8IYX3
Peptide AtlasQ8IYX3
IPIIPI00217909   IPI00795512   IPI00879565   IPI00878779   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYX3
IntAct (EBI)Q8IYX3
BioGRIDCCDC116
STRING (EMBL)CCDC116
ZODIACCCDC116
Ontologies - Pathways
QuickGOQ8IYX3
Ontology : AmiGOprotein binding  cytoplasm  centrosome  
Ontology : EGO-EBIprotein binding  cytoplasm  centrosome  
NDEx NetworkCCDC116
Atlas of Cancer Signalling NetworkCCDC116
Wikipedia pathwaysCCDC116
Orthology - Evolution
OrthoDB164592
Phylogenetic Trees/Animal Genes : TreeFamCCDC116
HOVERGENQ8IYX3
HOGENOMQ8IYX3
Homologs : HomoloGeneCCDC116
Homology/Alignments : Family Browser (UCSC)CCDC116
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC116
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC116 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC116
dbVarCCDC116
ClinVarCCDC116
1000_GenomesCCDC116 
Exome Variant ServerCCDC116
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP164592
Genomic Variants (DGV)CCDC116 [DGVbeta]
DECIPHERCCDC116 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC116 
Mutations
ICGC Data PortalCCDC116 
TCGA Data PortalCCDC116 
Broad Tumor PortalCCDC116
OASIS PortalCCDC116 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC116  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC116
BioMutasearch CCDC116
DgiDB (Drug Gene Interaction Database)CCDC116
DoCM (Curated mutations)CCDC116 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC116 (select a term)
intoGenCCDC116
Cancer3DCCDC116(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC116
MedgenCCDC116
Genetic Testing Registry CCDC116
NextProtQ8IYX3 [Medical]
TSGene164592
GENETestsCCDC116
Target ValidationCCDC116
Huge Navigator CCDC116 [HugePedia]
snp3D : Map Gene to Disease164592
BioCentury BCIQCCDC116
ClinGenCCDC116
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164592
Chemical/Pharm GKB GenePA145149301
Clinical trialCCDC116
Miscellaneous
canSAR (ICR)CCDC116 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC116
EVEXCCDC116
GoPubMedCCDC116
iHOPCCDC116
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.