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CCDC12 (coiled-coil domain containing 12)

Identity

Alias_symbol (synonym)MGC23918
Other alias-
HGNC (Hugo) CCDC12
LocusID (NCBI) 151903
Atlas_Id 61474
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46921730 and ends at 46976767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC12 (3p21.31) / IQSEC1 (3p25.2)CCDC12 (3p21.31) / S100A9 (1q21.3)CCDC12 (3p21.31) / SART3 (12q23.3)
GPHN (14q23.3) / CCDC12 (3p21.31)SETD2 (3p21.31) / CCDC12 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC12   28332
Cards
Entrez_Gene (NCBI)CCDC12  151903  coiled-coil domain containing 12
Aliases
GeneCards (Weizmann)CCDC12
Ensembl hg19 (Hinxton)ENSG00000160799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160799 [Gene_View]  chr3:46921730-46976767 [Contig_View]  CCDC12 [Vega]
ICGC DataPortalENSG00000160799
TCGA cBioPortalCCDC12
AceView (NCBI)CCDC12
Genatlas (Paris)CCDC12
WikiGenes151903
SOURCE (Princeton)CCDC12
Genetics Home Reference (NIH)CCDC12
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC12  -     chr3:46921730-46976767 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC12  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblCCDC12 - 3p21.31 [CytoView hg19]  CCDC12 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICCDC12 [Mapview hg19]  CCDC12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096749 AK098120 AK295532 AK303160 BC020830
RefSeq transcript (Entrez)NM_001277074 NM_144716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC12
Cluster EST : UnigeneHs.745081 [ NCBI ]
CGAP (NCI)Hs.745081
Alternative Splicing GalleryENSG00000160799
Gene ExpressionCCDC12 [ NCBI-GEO ]   CCDC12 [ EBI - ARRAY_EXPRESS ]   CCDC12 [ SEEK ]   CCDC12 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151903
GTEX Portal (Tissue expression)CCDC12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUD4
Splice isoforms : SwissVarQ8WUD4
PhosPhoSitePlusQ8WUD4
Domains : Interpro (EBI)mRNA_splic_Cwf18   
Domain families : Pfam (Sanger)cwf18 (PF08315)   
Domain families : Pfam (NCBI)pfam08315   
Conserved Domain (NCBI)CCDC12
DMDM Disease mutations151903
Blocks (Seattle)CCDC12
SuperfamilyQ8WUD4
Human Protein AtlasENSG00000160799
Peptide AtlasQ8WUD4
HPRD13007
IPIIPI01012992   IPI00925918   IPI00926034   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUD4
IntAct (EBI)Q8WUD4
FunCoupENSG00000160799
BioGRIDCCDC12
STRING (EMBL)CCDC12
ZODIACCCDC12
Ontologies - Pathways
QuickGOQ8WUD4
Ontology : AmiGOarginine-tRNA ligase activity  protein binding  ATP binding  cytoplasm  arginyl-tRNA aminoacylation  
Ontology : EGO-EBIarginine-tRNA ligase activity  protein binding  ATP binding  cytoplasm  arginyl-tRNA aminoacylation  
Pathways : KEGGSpliceosome   
NDEx NetworkCCDC12
Atlas of Cancer Signalling NetworkCCDC12
Wikipedia pathwaysCCDC12
Orthology - Evolution
OrthoDB151903
GeneTree (enSembl)ENSG00000160799
Phylogenetic Trees/Animal Genes : TreeFamCCDC12
HOVERGENQ8WUD4
HOGENOMQ8WUD4
Homologs : HomoloGeneCCDC12
Homology/Alignments : Family Browser (UCSC)CCDC12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC12
dbVarCCDC12
ClinVarCCDC12
1000_GenomesCCDC12 
Exome Variant ServerCCDC12
ExAC (Exome Aggregation Consortium)CCDC12 (select the gene name)
Genetic variants : HAPMAP151903
Genomic Variants (DGV)CCDC12 [DGVbeta]
DECIPHERCCDC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC12 
Mutations
ICGC Data PortalCCDC12 
TCGA Data PortalCCDC12 
Broad Tumor PortalCCDC12
OASIS PortalCCDC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC12
DgiDB (Drug Gene Interaction Database)CCDC12
DoCM (Curated mutations)CCDC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC12 (select a term)
intoGenCCDC12
Cancer3DCCDC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC12
Genetic Testing Registry CCDC12
NextProtQ8WUD4 [Medical]
TSGene151903
GENETestsCCDC12
Target ValidationCCDC12
Huge Navigator CCDC12 [HugePedia]
snp3D : Map Gene to Disease151903
BioCentury BCIQCCDC12
ClinGenCCDC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151903
Chemical/Pharm GKB GenePA134970849
Clinical trialCCDC12
Miscellaneous
canSAR (ICR)CCDC12 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC12
EVEXCCDC12
GoPubMedCCDC12
iHOPCCDC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:21 CEST 2017

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