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CCDC121 (coiled-coil domain containing 121)

Identity

Alias_symbol (synonym)FLJ43364
FLJ13646
Other alias-
HGNC (Hugo) CCDC121
LocusID (NCBI) 79635
Atlas_Id 61475
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27848506 and ends at 27851745 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC121   25833
Cards
Entrez_Gene (NCBI)CCDC121  79635  coiled-coil domain containing 121
Aliases
GeneCards (Weizmann)CCDC121
Ensembl hg19 (Hinxton)ENSG00000176714 [Gene_View]  chr2:27848506-27851745 [Contig_View]  CCDC121 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176714 [Gene_View]  chr2:27848506-27851745 [Contig_View]  CCDC121 [Vega]
ICGC DataPortalENSG00000176714
TCGA cBioPortalCCDC121
AceView (NCBI)CCDC121
Genatlas (Paris)CCDC121
WikiGenes79635
SOURCE (Princeton)CCDC121
Genetics Home Reference (NIH)CCDC121
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC121  -     chr2:27848506-27851745 -  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC121  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblCCDC121 - 2p23.3 [CytoView hg19]  CCDC121 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBICCDC121 [Mapview hg19]  CCDC121 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023708 AK124337 AK125354 BC056244 BC066936
RefSeq transcript (Entrez)NM_001142682 NM_001142683 NM_024584
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)CCDC121
Cluster EST : UnigeneHs.21081 [ NCBI ]
CGAP (NCI)Hs.21081
Alternative Splicing GalleryENSG00000176714
Gene ExpressionCCDC121 [ NCBI-GEO ]   CCDC121 [ EBI - ARRAY_EXPRESS ]   CCDC121 [ SEEK ]   CCDC121 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC121 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79635
GTEX Portal (Tissue expression)CCDC121
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUS5
Splice isoforms : SwissVarQ6ZUS5
PhosPhoSitePlusQ6ZUS5
Domains : Interpro (EBI)CCDC166/CCDC121   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC121
DMDM Disease mutations79635
Blocks (Seattle)CCDC121
SuperfamilyQ6ZUS5
Human Protein AtlasENSG00000176714
Peptide AtlasQ6ZUS5
HPRD07834
IPIIPI00002333   IPI00916541   IPI00976519   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUS5
IntAct (EBI)Q6ZUS5
FunCoupENSG00000176714
BioGRIDCCDC121
STRING (EMBL)CCDC121
ZODIACCCDC121
Ontologies - Pathways
QuickGOQ6ZUS5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC121
Atlas of Cancer Signalling NetworkCCDC121
Wikipedia pathwaysCCDC121
Orthology - Evolution
OrthoDB79635
GeneTree (enSembl)ENSG00000176714
Phylogenetic Trees/Animal Genes : TreeFamCCDC121
HOVERGENQ6ZUS5
HOGENOMQ6ZUS5
Homologs : HomoloGeneCCDC121
Homology/Alignments : Family Browser (UCSC)CCDC121
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC121 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC121
dbVarCCDC121
ClinVarCCDC121
1000_GenomesCCDC121 
Exome Variant ServerCCDC121
ExAC (Exome Aggregation Consortium)CCDC121 (select the gene name)
Genetic variants : HAPMAP79635
Genomic Variants (DGV)CCDC121 [DGVbeta]
DECIPHER (Syndromes)2:27848506-27851745  ENSG00000176714
CONAN: Copy Number AnalysisCCDC121 
Mutations
ICGC Data PortalCCDC121 
TCGA Data PortalCCDC121 
Broad Tumor PortalCCDC121
OASIS PortalCCDC121 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC121  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC121
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC121
DgiDB (Drug Gene Interaction Database)CCDC121
DoCM (Curated mutations)CCDC121 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC121 (select a term)
intoGenCCDC121
Cancer3DCCDC121(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC121
Genetic Testing Registry CCDC121
NextProtQ6ZUS5 [Medical]
TSGene79635
GENETestsCCDC121
Huge Navigator CCDC121 [HugePedia]
snp3D : Map Gene to Disease79635
BioCentury BCIQCCDC121
ClinGenCCDC121
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79635
Chemical/Pharm GKB GenePA147358222
Clinical trialCCDC121
Miscellaneous
canSAR (ICR)CCDC121 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC121
EVEXCCDC121
GoPubMedCCDC121
iHOPCCDC121
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:20 CET 2017

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