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CCDC122 (coiled-coil domain containing 122)

Identity

Alias_symbol (synonym)FLJ31846
Other alias-
HGNC (Hugo) CCDC122
LocusID (NCBI) 160857
Atlas_Id 54193
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 43836353 and ends at 43879690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC122 (13q14.11) / VPS36 (13q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC122   26478
Cards
Entrez_Gene (NCBI)CCDC122  160857  coiled-coil domain containing 122
Aliases
GeneCards (Weizmann)CCDC122
Ensembl hg19 (Hinxton)ENSG00000151773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151773 [Gene_View]  chr13:43836353-43879690 [Contig_View]  CCDC122 [Vega]
ICGC DataPortalENSG00000151773
TCGA cBioPortalCCDC122
AceView (NCBI)CCDC122
Genatlas (Paris)CCDC122
WikiGenes160857
SOURCE (Princeton)CCDC122
Genetics Home Reference (NIH)CCDC122
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC122  -     chr13:43836353-43879690 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC122  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblCCDC122 - 13q14.11 [CytoView hg19]  CCDC122 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBICCDC122 [Mapview hg19]  CCDC122 [Mapview hg38]
OMIM613408   
Gene and transcription
Genbank (Entrez)AK056408 AW373287 BC137289 BC137290 BC144570
RefSeq transcript (Entrez)NM_001350617 NM_001350618 NM_144974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC122
Cluster EST : UnigeneHs.170849 [ NCBI ]
CGAP (NCI)Hs.170849
Alternative Splicing GalleryENSG00000151773
Gene ExpressionCCDC122 [ NCBI-GEO ]   CCDC122 [ EBI - ARRAY_EXPRESS ]   CCDC122 [ SEEK ]   CCDC122 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC122 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160857
GTEX Portal (Tissue expression)CCDC122
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0U0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0U0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0U0
Splice isoforms : SwissVarQ5T0U0
PhosPhoSitePlusQ5T0U0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC122
DMDM Disease mutations160857
Blocks (Seattle)CCDC122
SuperfamilyQ5T0U0
Human Protein AtlasENSG00000151773
Peptide AtlasQ5T0U0
HPRD13406
IPIIPI00043427   IPI00845265   IPI00936958   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0U0
IntAct (EBI)Q5T0U0
FunCoupENSG00000151773
BioGRIDCCDC122
STRING (EMBL)CCDC122
ZODIACCCDC122
Ontologies - Pathways
QuickGOQ5T0U0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC122
Atlas of Cancer Signalling NetworkCCDC122
Wikipedia pathwaysCCDC122
Orthology - Evolution
OrthoDB160857
GeneTree (enSembl)ENSG00000151773
Phylogenetic Trees/Animal Genes : TreeFamCCDC122
HOVERGENQ5T0U0
HOGENOMQ5T0U0
Homologs : HomoloGeneCCDC122
Homology/Alignments : Family Browser (UCSC)CCDC122
Gene fusions - Rearrangements
Fusion : MitelmanCCDC122/VPS36 [13q14.11/13q14.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC122 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC122
dbVarCCDC122
ClinVarCCDC122
1000_GenomesCCDC122 
Exome Variant ServerCCDC122
ExAC (Exome Aggregation Consortium)CCDC122 (select the gene name)
Genetic variants : HAPMAP160857
Genomic Variants (DGV)CCDC122 [DGVbeta]
DECIPHERCCDC122 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC122 
Mutations
ICGC Data PortalCCDC122 
TCGA Data PortalCCDC122 
Broad Tumor PortalCCDC122
OASIS PortalCCDC122 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC122  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC122
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC122
DgiDB (Drug Gene Interaction Database)CCDC122
DoCM (Curated mutations)CCDC122 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC122 (select a term)
intoGenCCDC122
Cancer3DCCDC122(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613408   
Orphanet
MedgenCCDC122
Genetic Testing Registry CCDC122
NextProtQ5T0U0 [Medical]
TSGene160857
GENETestsCCDC122
Target ValidationCCDC122
Huge Navigator CCDC122 [HugePedia]
snp3D : Map Gene to Disease160857
BioCentury BCIQCCDC122
ClinGenCCDC122
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160857
Chemical/Pharm GKB GenePA147358230
Clinical trialCCDC122
Miscellaneous
canSAR (ICR)CCDC122 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC122
EVEXCCDC122
GoPubMedCCDC122
iHOPCCDC122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:48:52 CEST 2017

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